GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000686-TA|BGIBMGA000686-PA|IPR005399|KCNAB voltage-gated
K+ channel, beta subunit, IPR001395|Aldo/keto reductase
         (529 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          26   2.9  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   5.0  
AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           24   8.8  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   8.8  

>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 18   RSESTVSRCTPHTPLGLPDSASVDSNP----------MPTIYRCRAPIASLDCMDDFSAN 67
            R E+     TP TP GL +  S  + P          +P  Y  R P       D FS N
Sbjct: 1110 RPETPAFPVTPRTPYGLSNGTSSPALPPKSPTSQRITLPGRYEARNPAYQRTTKDLFSGN 1169

Query: 68   ---SQQMLDQAGEVT-VTRHMSTYMGNHTAMPSAVTP 100
               +Q++++Q   ++  T   ++   N  + P  V P
Sbjct: 1170 QQRTQELVNQNETLSCYTSRRNSTTSNANSEPQEVAP 1206


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 359  AITTGKGLGREEITGLFAK 377
            AITTGK +GR E T +F K
Sbjct: 2936 AITTGKVVGRPESTLIFDK 2954


>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 234 LVRVMNYVINEGWVMYWGTARWSPSEIMDAYTNC 267
           +   M YV   G V+  G+AR  P E++  + NC
Sbjct: 2   IAAAMKYVAL-GLVLLAGSARAEPGEVIPNHPNC 34


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 70  QMLDQAG-EVTVTRHMSTYMGNHTAMPSAV 98
           Q++D  G EV  T    T++GN  A PS V
Sbjct: 143 QLVDSLGLEVLNTGTAPTFLGNGVARPSVV 172


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,161
Number of Sequences: 2123
Number of extensions: 21748
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 4
length of query: 529
length of database: 516,269
effective HSP length: 67
effective length of query: 462
effective length of database: 374,028
effective search space: 172800936
effective search space used: 172800936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)