Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000685-TA|BGIBMGA000685-PA|undefined
         (190 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    28   1.0  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   9.4  
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    25   9.4  

>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 82  LCDLQRQAARLRHSRPSIP-DTTNNYRCVLKKACSAQFAKP--QSSQSISEGDGIFINLS 138
           L DL  Q   +    P +P DT NN   VL    S Q+A+     SQ+++   G+ I +S
Sbjct: 198 LTDLLCQEGVIDRLMPYMPPDTPNNLEGVLAIVSSPQYAQALRSFSQALNSPGGVNI-IS 256

Query: 139 RLGPCRDQS 147
            LG   D+S
Sbjct: 257 ALGLSLDES 265


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 NLSRLGPCRDQSIDSDCCENPGCTASTET 164
           NLS++GP    S+ S+   NP    +  T
Sbjct: 309 NLSQMGPSHSSSVPSNLSPNPAQNENPST 337


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
          Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 19 NGKFKRFVDVEKECQAREAEEVRKLDMELL 48
          N  F RF  +    Q    EE+R +D E++
Sbjct: 69 NAIFNRFKSISNNGQFPTPEEIRDMDFEIM 98


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,104
Number of Sequences: 5004
Number of extensions: 26313
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 3
length of query: 190
length of database: 2,362,478
effective HSP length: 69
effective length of query: 121
effective length of database: 2,017,202
effective search space: 244081442
effective search space used: 244081442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)