Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000685-TA|BGIBMGA000685-PA|undefined
         (190 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)            29   3.2  
SB_8425| Best HMM Match : EGF (HMM E-Value=0)                          29   3.2  
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_11530| Best HMM Match : 7tm_1 (HMM E-Value=5.1e-30)                 27   7.4  
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 85  LQRQAARLRHSRPSIPDTTNNYRCVLKKACSAQFAKPQSSQSISEGDGIFINLSRLGPCR 144
           L+RQ+ R  H   ++  TT N   VL+K           S S +E +G + N +      
Sbjct: 636 LRRQSKRFSHRNNNLARTTTNMASVLRKLVRKDARNLNGSGSDAEPNGRYSNKTPSEQTL 695

Query: 145 DQSIDSDCCENPGCTASTETR 165
           D +  S   +NP     TET+
Sbjct: 696 D-TRKSTKEKNPDNKEKTETK 715


>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
          Length = 446

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 145 DQSIDSDCCENPGCTASTETRTWRASTSDVNPRRRIDFV 183
           D S   D C+NP   +S ++R+  +S  +  PRR+++ +
Sbjct: 124 DASRSEDACKNPTKVSSQDSRSPFSSPINKPPRRKVEVI 162


>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1955

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 101 DTTNNYRCVLKKACSAQFAKPQSSQSISEGDGIFINLSRLGPCRDQSIDSDCCENPGCTA 160
           D  N Y C     C A FA  +  +++   D  + N    G C+++    +C  NPG + 
Sbjct: 601 DQVNGYTCT----CKAGFAGSRCDRNV---DNCYPNPCVNGVCKNKVNGYECACNPGYSG 653

Query: 161 ST 162
           ST
Sbjct: 654 ST 655


>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 71  RGMNTSWSHHRLCDLQRQAARL 92
           RGMN +++  RLCDL+   AR+
Sbjct: 352 RGMNAAFAIGRLCDLEAGCARI 373


>SB_11530| Best HMM Match : 7tm_1 (HMM E-Value=5.1e-30)
          Length = 455

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 99  IPDTTNNYRCVLKKACSAQFAKPQSSQSISEGDGIFINLSRLGPCRDQSI 148
           IP  TNNY+  + K    +    +SSQ + E D + ++     P R   I
Sbjct: 65  IPVMTNNYKDSIMKGVKEEAYSLESSQELLEKDVVQLHAPHYRPMRKDII 114


>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/39 (35%), Positives = 16/39 (41%)

Query: 144 RDQSIDSDCCENPGCTASTETRTWRASTSDVNPRRRIDF 182
           RD+S D  C E P C         R S    +  RRI F
Sbjct: 470 RDRSKDITCAEQPDCRTQVNESNDRDSVGTESMNRRIVF 508


>SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 144 RDQSIDSDCCENPGCTASTETRTWRASTSDVNPRRRIDFVR 184
           RD+SID+ C E P   A  +     +  S    +R +D+V+
Sbjct: 89  RDRSIDTPCSEEPRQNACVKPVLHMSVASGYFVQRNVDYVK 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,178,233
Number of Sequences: 59808
Number of extensions: 222801
Number of successful extensions: 478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 8
length of query: 190
length of database: 16,821,457
effective HSP length: 78
effective length of query: 112
effective length of database: 12,156,433
effective search space: 1361520496
effective search space used: 1361520496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)