Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000685-TA|BGIBMGA000685-PA|undefined
         (190 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 2   KRRLFQKKNWNSRKLNMNG 20
           K+R F +K W  ++  MNG
Sbjct: 142 KKREFMQKIWPFKEYQMNG 160


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 145 DQSIDSDCCENPGCTA 160
           DQS+D D C+N   T+
Sbjct: 569 DQSMDIDVCDNQTYTS 584


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 4   RLFQKKNWNSRKLNMNGK 21
           RLF +KN  + K+ M  K
Sbjct: 141 RLFDEKNAGNNKITMKSK 158


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,359
Number of Sequences: 429
Number of extensions: 1641
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 190
length of database: 140,377
effective HSP length: 54
effective length of query: 136
effective length of database: 117,211
effective search space: 15940696
effective search space used: 15940696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)