GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000685-TA|BGIBMGA000685-PA|undefined
         (190 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1278 - 35416451-35416458,35416777-35416969,35416970-354170...    29   1.8  
03_06_0226 + 32495088-32495237,32496189-32496351,32496438-324965...    29   2.4  
01_01_0734 + 5726326-5727517,5727587-5727771,5727776-5728756           29   2.4  
09_02_0296 + 7041463-7042351,7042450-7042606,7042758-7042839,704...    28   5.5  
07_03_0522 - 19021915-19022649,19022725-19023012,19023091-190235...    27   7.2  
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961...    27   9.6  
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983...    27   9.6  

>02_05_1278 -
           35416451-35416458,35416777-35416969,35416970-35417056,
           35417851-35417892,35418542-35418617,35418954-35421589
          Length = 1013

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 77  WSHHRLCDLQRQAARLRHSRPSIPDTTNNYRCVLKKACSAQFAKPQSSQSISEG---DGI 133
           +SH RL  L+   A LR SRP    TT  Y  +L        A    ++    G   DG+
Sbjct: 81  YSHCRLRLLRPAIALLRSSRP----TTVAYNILLAALSDHAHAPAVLAEMCKRGVPFDGV 136

Query: 134 FINLSRLGPCRDQSIDS 150
            +N    G CR+  +D+
Sbjct: 137 TVNTLLAGLCRNGQVDA 153


>03_06_0226 +
           32495088-32495237,32496189-32496351,32496438-32496576,
           32496669-32496945,32497051-32497249,32497379-32497704
          Length = 417

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 107 RCVLKKACSAQFAKPQSSQSIS--EGDGIFINLSRLGPCRDQSIDSDC--CENPGCTAST 162
           R VL   C+ + +K  +S   S  +G G+ + + +LGP   Q +   C  C+  G T S 
Sbjct: 142 RNVLCSKCNGKGSKSGASMKCSGCQGSGMKVQIRQLGPGMIQQMQHPCNECKGTGETISD 201

Query: 163 ETR 165
           + R
Sbjct: 202 KDR 204


>01_01_0734 + 5726326-5727517,5727587-5727771,5727776-5728756
          Length = 785

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 90  ARLRHSRPSIPDTTNNYRCVLKKACSAQFAKPQSSQSISEGDGIFINLSRLGPCRDQSID 149
           + +R+ RP + D   +  C L+   S QF +     S+     ++ + SR+    D+   
Sbjct: 340 SHIRYFRP-VDDRRPHLGCTLETPISCQFVQDHQLISLPNVSYLYYDSSRVSELTDEESS 398

Query: 150 SDC 152
            DC
Sbjct: 399 GDC 401


>09_02_0296 +
           7041463-7042351,7042450-7042606,7042758-7042839,
           7043082-7043120
          Length = 388

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 134 FINLSRLGPCRDQSIDSDCCENPGCTASTETRTWRASTSDV----NPRRRIDFVRAP 186
           +I     GP  DQ++DSD    P   + TE  T     +D+     P+R +   + P
Sbjct: 4   YITKESQGPSGDQTLDSDVANEPN-DSETEIETTVVEPNDILAQLGPKRDLSIQKGP 59


>07_03_0522 -
           19021915-19022649,19022725-19023012,19023091-19023548,
           19023939-19024329,19024422-19024668,19024742-19024815,
           19024905-19024961
          Length = 749

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 126 SISEGDGIFINLSRLGPCRDQSIDSDCCENPGCTASTE 163
           +IS+G GI +N  RL   + +++   CC + G   +T+
Sbjct: 96  AISKGFGIRLNKERLNVNKQRTMRQICCSHQGKNTNTK 133


>11_03_0072 +
           9605273-9606814,9616982-9617016,9617271-9617348,
           9617427-9617501,9617583-9617657,9617731-9617977,
           9618070-9618313,9618852-9619309,9619388-9619675,
           9619751-9619788,9619882-9620452
          Length = 1216

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 126 SISEGDGIFINLSRLGPCRDQSIDSDCCENPGCTASTE 163
           ++S+G GI +N  RL   + +++   CC + G   +T+
Sbjct: 654 AVSKGFGIRLNKERLNVNKQRTMRQICCSHQGKNTNTK 691


>06_03_0956 +
           26296744-26297382,26297595-26297669,26298147-26298341,
           26298426-26298559,26298713-26298779,26298985-26299043,
           26299204-26299321,26299613-26299726,26299855-26299986,
           26300076-26300492,26300904-26300954,26301303-26301373,
           26302067-26302151,26302258-26302410,26302522-26302596,
           26302755-26302844,26303953-26304000,26304081-26304195,
           26305356-26305459,26305582-26305692
          Length = 950

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 2   KRRLFQKKNWNSRKLNMNGKFKRFVDVEKECQAREAEEVRKLDMELL 48
           + R  +++   +RK       +R V  E E  AR A+E R+L+ E+L
Sbjct: 75  RERERERERERARKAEHRRLRQRQVKAETEAWARAADEYRELEREML 121


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,213,636
Number of Sequences: 37544
Number of extensions: 178770
Number of successful extensions: 385
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 7
length of query: 190
length of database: 14,793,348
effective HSP length: 78
effective length of query: 112
effective length of database: 11,864,916
effective search space: 1328870592
effective search space used: 1328870592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)