Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000685-TA|BGIBMGA000685-PA|undefined
(190 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U63830-1|AAC50770.1| 425|Homo sapiens TRAF family member-associ... 32 1.1
U59863-1|AAC50681.1| 425|Homo sapiens I-TRAF protein. 32 1.1
BC067779-1|AAH67779.1| 425|Homo sapiens TANK protein protein. 32 1.1
AC009299-1|AAX88939.1| 392|Homo sapiens unknown protein. 32 1.1
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 31 3.3
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.3
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.3
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.3
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.3
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.3
CR456977-1|CAG33258.1| 124|Homo sapiens WFDC2 protein. 29 10.0
BC046106-1|AAH46106.1| 124|Homo sapiens WAP four-disulfide core... 29 10.0
AY212888-1|AAO52683.1| 124|Homo sapiens HE4 protein protein. 29 10.0
AL031663-3|CAB37641.1| 124|Homo sapiens WAP four-disulfide core... 29 10.0
>U63830-1|AAC50770.1| 425|Homo sapiens TRAF family
member-associated NF-kB activator TANK protein.
Length = 425
Score = 32.3 bits (70), Expect = 1.1
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 80 HRLCDLQRQAARLRHSRPSIPDTTNNYRCVLKKACSAQ------FAKPQSSQSISEGDGI 133
H++C L + A + S+ +IPDT +C + C+ + KPQ+ I+ G
Sbjct: 150 HKICMLAK-AQKDHLSKLNIPDTATETQCSVPIQCTDKTDKQEALFKPQAKDDINRGAPS 208
Query: 134 FINLSRLGPCRDQ 146
+++ G CRD+
Sbjct: 209 ITSVTPRGLCRDE 221
>U59863-1|AAC50681.1| 425|Homo sapiens I-TRAF protein.
Length = 425
Score = 32.3 bits (70), Expect = 1.1
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 75 TSWS----HHRLCDLQRQAARLRHSRPSIPDTTNNYRCVLKKACSAQFAK------PQSS 124
TSW H++C L + A + S+ +IPDT +C + C+ + K PQ+
Sbjct: 141 TSWDLKEEFHKICMLAK-AQKDHLSKLNIPDTATETQCSVPIQCTDKTDKQEALFTPQAK 199
Query: 125 QSISEGDGIFINLSRLGPCRDQ 146
I+ G +++ G CRD+
Sbjct: 200 DDINRGAPSITSVTPRGLCRDE 221
>BC067779-1|AAH67779.1| 425|Homo sapiens TANK protein protein.
Length = 425
Score = 32.3 bits (70), Expect = 1.1
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 80 HRLCDLQRQAARLRHSRPSIPDTTNNYRCVLKKACSAQ------FAKPQSSQSISEGDGI 133
H++C L + A + S+ +IPDT +C + C+ + KPQ+ I+ G
Sbjct: 150 HKICMLAK-AQKDHLSKLNIPDTATETQCSVPIQCTDKTDKQEALFKPQAKDDINRGAPS 208
Query: 134 FINLSRLGPCRDQ 146
+++ G CRD+
Sbjct: 209 ITSVTPRGLCRDE 221
>AC009299-1|AAX88939.1| 392|Homo sapiens unknown protein.
Length = 392
Score = 32.3 bits (70), Expect = 1.1
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 80 HRLCDLQRQAARLRHSRPSIPDTTNNYRCVLKKACSAQ------FAKPQSSQSISEGDGI 133
H++C L + A + S+ +IPDT +C + C+ + KPQ+ I+ G
Sbjct: 117 HKICMLAK-AQKDHLSKLNIPDTATETQCSVPIQCTDKTDKQEALFKPQAKDDINRGAPS 175
Query: 134 FINLSRLGPCRDQ 146
+++ G CRD+
Sbjct: 176 ITSVTPRGLCRDE 188
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 130 GDGIFINLSRLGPCRDQSIDSDCCENPGCTASTETRTW 167
G G+ + +S L P + C N GCTAS W
Sbjct: 4401 GQGLCLLVSHLQPYSQYNFSLVACTNGGCTASVSKSAW 4438
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 130 GDGIFINLSRLGPCRDQSIDSDCCENPGCTASTETRTW 167
G G+ + +S L P + C N GCTAS W
Sbjct: 4401 GQGLCLLVSHLQPYSQYNFSLVACTNGGCTASVSKSAW 4438
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 130 GDGIFINLSRLGPCRDQSIDSDCCENPGCTASTETRTW 167
G G+ + +S L P + C N GCTAS W
Sbjct: 4401 GQGLCLLVSHLQPYSQYNFSLVACTNGGCTASVSKSAW 4438
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 130 GDGIFINLSRLGPCRDQSIDSDCCENPGCTASTETRTW 167
G G+ + +S L P + C N GCTAS W
Sbjct: 4401 GQGLCLLVSHLQPYSQYNFSLVACTNGGCTASVSKSAW 4438
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 130 GDGIFINLSRLGPCRDQSIDSDCCENPGCTASTETRTW 167
G G+ + +S L P + C N GCTAS W
Sbjct: 4401 GQGLCLLVSHLQPYSQYNFSLVACTNGGCTASVSKSAW 4438
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 130 GDGIFINLSRLGPCRDQSIDSDCCENPGCTASTETRTW 167
G G+ + +S L P + C N GCTAS W
Sbjct: 4401 GQGLCLLVSHLQPYSQYNFSLVACTNGGCTASVSKSAW 4438
>CR456977-1|CAG33258.1| 124|Homo sapiens WFDC2 protein.
Length = 124
Score = 29.1 bits (62), Expect = 10.0
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 112 KACSAQFAKPQSSQSISEGD--GIFINLSRLGPCRDQ-SIDSDC 152
K CSA A S + EG + IN +LG CRDQ +DS C
Sbjct: 60 KCCSAGCATFCSLPNDKEGSCPQVNINFPQLGLCRDQCQVDSQC 103
>BC046106-1|AAH46106.1| 124|Homo sapiens WAP four-disulfide core
domain 2 protein.
Length = 124
Score = 29.1 bits (62), Expect = 10.0
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 112 KACSAQFAKPQSSQSISEGD--GIFINLSRLGPCRDQ-SIDSDC 152
K CSA A S + EG + IN +LG CRDQ +DS C
Sbjct: 60 KCCSAGCATFCSLPNDKEGSCPQVNINFPQLGLCRDQCQVDSQC 103
>AY212888-1|AAO52683.1| 124|Homo sapiens HE4 protein protein.
Length = 124
Score = 29.1 bits (62), Expect = 10.0
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 112 KACSAQFAKPQSSQSISEGD--GIFINLSRLGPCRDQ-SIDSDC 152
K CSA A S + EG + IN +LG CRDQ +DS C
Sbjct: 60 KCCSAGCATFCSLPNDKEGSCPQVNINFPQLGLCRDQCQVDSQC 103
>AL031663-3|CAB37641.1| 124|Homo sapiens WAP four-disulfide core
domain 2 protein.
Length = 124
Score = 29.1 bits (62), Expect = 10.0
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 112 KACSAQFAKPQSSQSISEGD--GIFINLSRLGPCRDQ-SIDSDC 152
K CSA A S + EG + IN +LG CRDQ +DS C
Sbjct: 60 KCCSAGCATFCSLPNDKEGSCPQVNINFPQLGLCRDQCQVDSQC 103
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.320 0.131 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,595,045
Number of Sequences: 224733
Number of extensions: 884558
Number of successful extensions: 5291
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5279
Number of HSP's gapped (non-prelim): 20
length of query: 190
length of database: 73,234,838
effective HSP length: 86
effective length of query: 104
effective length of database: 53,907,800
effective search space: 5606411200
effective search space used: 5606411200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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