GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000685-TA|BGIBMGA000685-PA|undefined
         (190 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    28   4.9  
Z78063-2|CAB01503.2|  275|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
           protein F33C8.1b protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 107 RCVLKKACSAQFAKPQSSQSISEGDGIFIN---LSRLGPCRDQSIDSDCCENPGC 158
           RC+  +A +  FA  Q    ++ G G  IN    +    C +     +C  +PGC
Sbjct: 814 RCINLEAYTLSFAYGQCHSWVTSGSGSVINRVCQAESVVCEEHKTCGECQRDPGC 868


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 107 RCVLKKACSAQFAKPQSSQSISEGDGIFIN---LSRLGPCRDQSIDSDCCENPGC 158
           RC+  +A +  FA  Q    ++ G G  IN    +    C +     +C  +PGC
Sbjct: 851 RCINLEAYTLSFAYGQCHSWVTSGSGSVINRVCQAESVVCEEHKTCGECQRDPGC 905


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 107 RCVLKKACSAQFAKPQSSQSISEGDGIFIN---LSRLGPCRDQSIDSDCCENPGC 158
           RC+  +A +  FA  Q    ++ G G  IN    +    C +     +C  +PGC
Sbjct: 851 RCINLEAYTLSFAYGQCHSWVTSGSGSVINRVCQAESVVCEEHKTCGECQRDPGC 905


>Z78063-2|CAB01503.2|  275|Caenorhabditis elegans Hypothetical
           protein F45D3.2 protein.
          Length = 275

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/68 (20%), Positives = 31/68 (45%)

Query: 84  DLQRQAARLRHSRPSIPDTTNNYRCVLKKACSAQFAKPQSSQSISEGDGIFINLSRLGPC 143
           D +++  R R   PS+P TT+   C    + S+        +++ E D   ++ +++ P 
Sbjct: 145 DQEKRRKRTRKMEPSLPITTSTITCSSNSSPSSSSITTSVLRTLVEDDDADVHPNKVRPI 204

Query: 144 RDQSIDSD 151
           +    + D
Sbjct: 205 QVTKEEED 212


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,413,557
Number of Sequences: 27539
Number of extensions: 158570
Number of successful extensions: 358
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 4
length of query: 190
length of database: 12,573,161
effective HSP length: 77
effective length of query: 113
effective length of database: 10,452,658
effective search space: 1181150354
effective search space used: 1181150354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)