GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000685-TA|BGIBMGA000685-PA|undefined
         (190 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04890.1 68418.m00513 small heat shock-like protein (RTM2) si...    27   8.0  
At4g27595.1 68417.m03964 protein transport protein-related low s...    27   8.0  

>At5g04890.1 68418.m00513 small heat shock-like protein (RTM2)
           similar to 17.9 kDa heat-shock protein [Helianthus
           annuus] GI:11990130; contains Pfam profile PF00011:
           Hsp20/alpha crystallin family; supporting cDNA
           gi|7407072|gb|AF208051.1|AF208051; identical to cDNA
           small heat shock-like protein (RTM2) GI:7407072, small
           heat shock-like protein [Arabidopsis thaliana]
           GI:7407073
          Length = 366

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 1   MKRRLFQKKNWNSRKLNMNGKFKRFVDVEK---ECQAREAEEVRKLDMEL 47
           MK++L ++K    RKL    K K   ++ K   E +A+E    +KL  E+
Sbjct: 151 MKKQLLEEKEALIRKLQEEAKAKEEAEMRKLQEEAKAKEEAAAKKLQEEI 200


>At4g27595.1 68417.m03964 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 3   RRLFQKKNWNSRKLNMNGKFKRFVDVEKECQAREAEEVRKLDMELLH 49
           +++ + KN     L+   + +      +E +A+EA  ++K+D ELLH
Sbjct: 948 QKIEELKNLKQSLLDKENELEGVFQANEELKAKEASSLKKID-ELLH 993


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,190,537
Number of Sequences: 28952
Number of extensions: 144679
Number of successful extensions: 295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 2
length of query: 190
length of database: 12,070,560
effective HSP length: 77
effective length of query: 113
effective length of database: 9,841,256
effective search space: 1112061928
effective search space used: 1112061928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)