Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000683-TA|BGIBMGA000683-PA|IPR001715|Calponin-like
actin-binding
         (367 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf...    31   1.2  
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar...    30   2.8  
At1g21170.1 68414.m02647 expressed protein                             30   2.8  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   4.9  
At5g40450.1 68418.m04905 expressed protein                             29   4.9  
At4g21900.1 68417.m03166 MATE efflux family protein similar to r...    29   4.9  

>At4g10630.1 68417.m01737 glutaredoxin family protein contains
          Pfam profile PF00462: Glutaredoxin
          Length = 334

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 46 GKYAIDSPGSPTAPEIPPEEYTLNENEERAIIEPRSLE-DPRV 87
          G   +D P  P+ P  PPE++T++   +    EPR ++ +P +
Sbjct: 38 GLLTLDPPPPPSPPMTPPEKFTVDTKSKSIWSEPRVIKSEPEI 80


>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
           gb|U06698 neuronal kinesin heavy chain from Homo sapiens
           and contains a PF|00225 Kinesin motor domain. EST
           gb|AA042507 comes from this gene; identical to cDNA
           MKRP1 mRNA for kinesin-related protein,  GI:16902291,
           kinesin-related protein [Arabidopsis thaliana]
           GI:16902292
          Length = 890

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 60  EIPPEEYTLNENEERAIIEPRSLEDPRVRDLIQVLIDWINDELASQRIIVQDIIE 114
           E+     +LN   E+A   P   ED  +RD IQ L D I+++    R++ Q IIE
Sbjct: 641 EVALRTSSLNRLSEQAARNP---EDFHIRDQIQKLEDEISEKKDQIRVLEQQIIE 692


>At1g21170.1 68414.m02647 expressed protein
          Length = 1090

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 66  YTLNENEERAIIEPRSLEDPRVRDLIQVL--IDWINDELASQ 105
           Y+ +  EE++I  P S+ DP  R L+ +L  I +  DELAS+
Sbjct: 768 YSNDHQEEQSINAPESVVDPH-RQLLMILSNIGYCKDELASE 808


>At5g45050.1 68418.m05523 disease resistance protein-related similar
           to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
           profiles PF03106: WRKY DNA -binding domain, PF00931:
           NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 59  PEIPPEEYTLNENEERAIIEPRSLEDPRVRDLIQVLID 96
           PEIPP   TLN      I  P S+  P  R+L+ +L +
Sbjct: 655 PEIPPNIETLNLQGTGIIELPLSIVKPNYRELLNLLAE 692


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 40  QDVQAEGKYAIDSPGSPTAPEIPPEEYTLNEN--EERAIIEPRSLEDPRVRDLIQVL 94
           Q+ Q +G Y +++     +    PE   L E   EER++I+P  L+ P +    +VL
Sbjct: 896 QEGQVDGSYGLETKEETVSV---PESIELEEQPQEERSVIDPTPLQKPTLESPSEVL 949


>At4g21900.1 68417.m03166 MATE efflux family protein similar to
            ripening regulated protein DDTFR18 [Lycopersicon
            esculentum] GI:12231296; contains Pfam profile PF01554:
            MatE
          Length = 1094

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 310  LTPQDFDQ-KVHNVSFAFELMQDVGLGKPKARPEDIVNLDL--KSTLRVLYNLFT 361
            L P++ +Q K    S  F+LM++  + + +  PE++++L+L  K+TL V  N+ T
Sbjct: 1034 LVPKETEQQKTTGGSHGFDLMEEEPVRQGEKLPEELLHLELGNKTTLSVDNNIST 1088


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,139,845
Number of Sequences: 28952
Number of extensions: 313985
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 6
length of query: 367
length of database: 12,070,560
effective HSP length: 82
effective length of query: 285
effective length of database: 9,696,496
effective search space: 2763501360
effective search space used: 2763501360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)