GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000683-TA|BGIBMGA000683-PA|IPR001715|Calponin-like
actin-binding
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    37   0.022
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785...    29   4.5  
11_04_0218 + 14983132-14984658,14984762-14984869,14984964-149851...    29   7.8  
01_06_0739 - 31601656-31602233,31602777-31602906                       29   7.8  

>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 37.1 bits (82), Expect = 0.022
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 271 LSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQKVHNVSFAFELMQ 330
           LS+ +  V +L     DG+ LC ++ LL      +         + +++HN + A + ++
Sbjct: 401 LSEYDFTVGNLFEDLQDGIILCRIIQLLTSDASIILKVIAPSDTYKKRLHNCTMAIQYIK 460

Query: 331 DVGLGKPKA-----RPEDIVNLDLKSTLRVLYNLF 360
             G     A       EDIVN D +  L +L+N+F
Sbjct: 461 QAGFPLSDADGLSISAEDIVNGDKELILALLWNMF 495


>02_05_0544 +
           29876337-29876524,29876850-29876882,29878390-29878577,
           29879755-29879811,29879909-29880061,29880812-29881278,
           29881477-29881635,29881718-29881834,29881966-29882117,
           29883436-29883530,29883619-29884525,29884604-29884688,
           29884775-29884843,29885045-29885224,29885367-29885495
          Length = 992

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 293 LLMGLLEEFFVPLYDFHLTPQDFDQKVHNVSFAF 326
           +L+  ++EF    YDF   P DF  K  NV +AF
Sbjct: 844 MLLAAIDEFHKGTYDFFYLPIDFKNKC-NVGYAF 876


>11_04_0218 +
           14983132-14984658,14984762-14984869,14984964-14985125,
           14985270-14985275
          Length = 600

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 18/79 (22%), Positives = 35/79 (44%)

Query: 38  EVQDVQAEGKYAIDSPGSPTAPEIPPEEYTLNENEERAIIEPRSLEDPRVRDLIQVLIDW 97
           +  + +     A+D+P  P A EIP       E ++      + L D + + ++  + DW
Sbjct: 277 DAAEAECRRALAVDNPDDPAAHEIPLGSAIGEEYDDMVSSLRKQLCDLQKKLVLLAVHDW 336

Query: 98  INDELASQRIIVQDIIEDL 116
            + E   Q  I+   I++L
Sbjct: 337 ASMESEKQSQILSVSIDEL 355


>01_06_0739 - 31601656-31602233,31602777-31602906
          Length = 235

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 51  DSPGSPTAPEIPPEEYTLNENEERAIIEPRSLEDPRVRDLIQVL 94
           D+ G PT  ++  +E TL  N + AI E       ++RD +++L
Sbjct: 64  DADGYPTTEDLSIDEETLQRNLQTAIQEEDYSRAAKIRDDLRIL 107


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,994
Number of Sequences: 37544
Number of extensions: 374406
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 840
Number of HSP's gapped (non-prelim): 4
length of query: 367
length of database: 14,793,348
effective HSP length: 83
effective length of query: 284
effective length of database: 11,677,196
effective search space: 3316323664
effective search space used: 3316323664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)