Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000682-TA|BGIBMGA000682-PA|IPR013753|Ras, IPR003577|Ras
small GTPase, Ras type, IPR003579|Ras small GTPase, Rab type,
IPR003578|Ras small GTPase, Rho type
         (151 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   3.5  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   3.5  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   4.6  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory
          receptor candidate 18 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 11 LKVVLLGDGCVGKTSLLLRYI 31
          L+ V+LG  C+  TSL + +I
Sbjct: 34 LQTVILGTTCIYLTSLYIWFI 54


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory
          receptor candidate 17 protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 11 LKVVLLGDGCVGKTSLLLRYI 31
          L+ V+LG  C+  TSL + +I
Sbjct: 34 LQTVILGTTCIYLTSLYIWFI 54


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 50  KRLNINGNRVNLSIWDT 66
           KRLN+ GN++    ++T
Sbjct: 143 KRLNLKGNKIATIAYET 159


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,214
Number of Sequences: 317
Number of extensions: 1076
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 151
length of database: 114,650
effective HSP length: 52
effective length of query: 99
effective length of database: 98,166
effective search space:  9718434
effective search space used:  9718434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)