Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000682-TA|BGIBMGA000682-PA|IPR013753|Ras, IPR003577|Ras
small GTPase, Ras type, IPR003579|Ras small GTPase, Rab type,
IPR003578|Ras small GTPase, Rho type
(151 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 103 2e-23
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 97 8e-22
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 95 4e-21
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 92 3e-20
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 90 2e-19
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 87 1e-18
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 87 1e-18
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 81 7e-17
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 70 1e-13
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 68 5e-13
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 66 2e-12
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 64 9e-12
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 64 1e-11
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 63 2e-11
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 63 2e-11
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 62 4e-11
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 60 2e-10
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 59 3e-10
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 52 5e-08
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 46 3e-06
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 39 3e-04
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 29 0.23
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.30
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 28 0.53
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 0.53
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 28 0.70
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 28 0.70
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 27 1.2
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 2.8
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 2.8
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 4.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.5
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 24 8.6
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 24 8.6
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 103 bits (246), Expect = 2e-23
Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 10 NLKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNR-VNLSIWDTAG 68
N K+VLLGD VGK+SL+LR+++D+F++ +T+ A FL + L I+ N V L IWDTAG
Sbjct: 14 NQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAG 73
Query: 69 QEKFHALGPIYYRNSNGAILVYDITDEDSFRK 100
QE++ +L P+YYRN+N AI+VYDIT S K
Sbjct: 74 QERYKSLAPMYYRNANCAIVVYDITQAASLEK 105
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 97.5 bits (232), Expect = 8e-22
Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 12 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 71
K++L+GD VGK+ LLLR+ +D + E +++T+ F + + G V L IWDTAGQE+
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 72 FHALGPIYYRNSNGAILVYDITDEDSFRKGVEELFLDLTREMLE 115
F + YYR ++G I+VYD+TD+DSF V++ ++ R +E
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSF-NNVKQWLQEIDRYAVE 112
Score = 27.5 bits (58), Expect = 0.93
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 102 VEELFLDLTREMLERQEHNTQTEVNRTSQXXXXXXXXXXQST--CC 145
VE+ FL ++R++ ER +NT N S QS+ CC
Sbjct: 158 VEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 95.1 bits (226), Expect = 4e-21
Identities = 40/88 (45%), Positives = 60/88 (68%)
Query: 11 LKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 70
+K++L+GD VGK+ LLLR+ ED F +TT+ F + + ++G R+ L IWDTAGQE
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 71 KFHALGPIYYRNSNGAILVYDITDEDSF 98
+F + YYR + G +L+YD+TD+ SF
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSF 97
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 92.3 bits (219), Expect = 3e-20
Identities = 42/90 (46%), Positives = 62/90 (68%)
Query: 9 RNLKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 68
R K+V LG+ VGKTSL+ R++ D+F+ + T+ FL+K + + V L +WDTAG
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 69 QEKFHALGPIYYRNSNGAILVYDITDEDSF 98
QE+F +L P Y R+S+ AI+VYDIT+ +SF
Sbjct: 70 QERFRSLIPSYIRDSSVAIIVYDITNHNSF 99
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 89.8 bits (213), Expect = 2e-19
Identities = 38/88 (43%), Positives = 61/88 (69%)
Query: 11 LKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 70
LKV++LG+ VGKTS++ +Y+ KF++ + T+ A FL K + ++ V L +WDTAGQE
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Query: 71 KFHALGPIYYRNSNGAILVYDITDEDSF 98
+F +LG +YR ++ +LVYD+ + SF
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSF 96
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 87.0 bits (206), Expect = 1e-18
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 12 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 71
K VL+GD VGK++LL+R+ ++FN + +T+ F + + ++ ++ IWDTAGQE+
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 72 FHALGPIYYRNSNGAILVYDITDEDSF 98
+ A+ YYR + GA++VYDIT + SF
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSF 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 87.0 bits (206), Expect = 1e-18
Identities = 37/88 (42%), Positives = 60/88 (68%)
Query: 11 LKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 70
LKVV+LGD VGKT L+ +++ KF+ ++ T+ A FL K + ++ V L +WDTAGQE
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 71 KFHALGPIYYRNSNGAILVYDITDEDSF 98
+F +LG +YR ++ ++VY++ + SF
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSF 96
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 81.0 bits (191), Expect = 7e-17
Identities = 38/94 (40%), Positives = 65/94 (69%), Gaps = 4/94 (4%)
Query: 11 LKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNIN-GN---RVNLSIWDT 66
+K+VL G GK+ LL R+++++++++ T+ F ++ +++ GN R+ L IWDT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 67 AGQEKFHALGPIYYRNSNGAILVYDITDEDSFRK 100
AGQEKF ++ YYR + GA+LVYD+T++DSF +
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEE 103
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 70.1 bits (164), Expect = 1e-13
Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 9 RNLKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 68
R K+V++GDG VGK++L ++ I+ F +++ T++ ++ K+ I+G L + DTAG
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSY-RKKCEIDGEGALLDVLDTAG 65
Query: 69 QEKFHALGPIYYRNSNGAILVYDITDEDSF 98
QE++ A+ Y R G +LVY+IT SF
Sbjct: 66 QEEYSAMREQYMRTGEGFLLVYNITSRSSF 95
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 68.1 bits (159), Expect = 5e-13
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 12 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 71
K+VL+GDG GKT+ + R++ +F +K++ TL + N + ++WDTAGQEK
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 72 FHALGPIYYRNSNGAILVYDITDEDSFRKGVEELFLDLTR 111
L YY I+++D+T ++ K V + DL R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITY-KNVPHWWRDLVR 109
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 66.5 bits (155), Expect = 2e-12
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 11 LKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 70
+KV ++GD +GKTSL++ Y++ F+E+ TL F+ K ++I + SIWD GQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 71 KFHALGPIYYRNSNGAILVYDIT 93
+F + P+ ++ + ++D++
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLS 93
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 64.1 bits (149), Expect = 9e-12
Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 12 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 71
K+V+LGDG GKTSLL + + F + + T+ +++ + ++GN + LS+WDTAGQE+
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHD-IFVDGNSIELSLWDTAGQEE 73
Query: 72 FHALGPIYYRNSNGAILVYDITDEDS 97
+ L + Y +++ ++ + + DS
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDS 99
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 63.7 bits (148), Expect = 1e-11
Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 12 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 71
K+V++GDG GKT LL+ + + F E ++ T+ ++ + ++G V L++WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHVELALWDTAGQED 66
Query: 72 FHALGPIYYRNSNGAILVYDITDEDS 97
+ L P+ Y +S+ ++ + + DS
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDS 92
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 63.3 bits (147), Expect = 2e-11
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 9 RNLKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 68
++ ++ +LG VGK+SL ++Y+E+ F E + T++ TF +K + G I DTAG
Sbjct: 5 KSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAG 63
Query: 69 QEKFHALGPIYYRNSNGAILVYDITDEDSF 98
Q+++ L + +G +LVY IT + SF
Sbjct: 64 QDEYSILNSKHSIGIHGYVLVYSITSKSSF 93
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 62.9 bits (146), Expect = 2e-11
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 12 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNK-RLNINGNRVNLSIWDTAGQE 70
K+V++GDG GKT LL+ + F E+++ T+ ++ N + L++WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 71 KFHALGPIYYRNSNGAILVYDITDEDSFRKGVEELF 106
++ L P+ Y NSN +L + I S E+ +
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWY 111
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 62.1 bits (144), Expect = 4e-11
Identities = 27/86 (31%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 12 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 71
K+V++GDG GKT LL+ + + F E ++ T+ ++ + ++G + L++WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHIELALWDTAGQED 66
Query: 72 FHALGPIYYRNSNGAILVYDITDEDS 97
+ L P+ Y +S+ ++ + + +S
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPES 92
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 59.7 bits (138), Expect = 2e-10
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 12 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 71
K+V++GDG GKTSLL + F +++ T+ +++ ++G V L++WDTAGQE+
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSD-CRVDGKSVQLALWDTAGQEE 68
Query: 72 FHALGPIYYRNSNGAILVYDITDEDSFR----KGVEEL 105
+ L P+ Y ++ ++ + I DS K +EE+
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEI 106
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 58.8 bits (136), Expect = 3e-10
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 11 LKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 70
+K V++GDG VGKT LL+ Y +KF ++ T+ + + I L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYA-VTVMIGDEPYTLGLFDTAGQE 62
Query: 71 KFHALGPIYYRNSNGAILVYDITDEDSFRKGVEELF 106
+ L P+ Y ++ ++ + +T SF E+ F
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWF 98
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 51.6 bits (118), Expect = 5e-08
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 7 GARNLKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDT 66
G R ++++++G GKT++L + K E +TT+ N + ++ ++WD
Sbjct: 14 GKREMRILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYRNISFTVWDV 68
Query: 67 AGQEKFHALGPIYYRNSNGAILVYDITDEDSFRKGVEEL 105
GQ+K L Y++N+ G I V D D + + EEL
Sbjct: 69 GGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEEL 107
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 45.6 bits (103), Expect = 3e-06
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 9 RNLKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 68
+ +++++LG GKT++L + K N+ + T+ N + + ++WD G
Sbjct: 20 KEMRILMLGLDAAGKTTILYKL---KLNQS-VVTIPTVGFNVE-TVTYKNIKFNVWDVGG 74
Query: 69 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKGVEELFLDLT-REM 113
Q+K L Y+ + G I V D D + + +EL ++ REM
Sbjct: 75 QDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREM 120
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 39.1 bits (87), Expect = 3e-04
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 9 RNLKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 68
R ++V+LLG GKT++L + + NE T F + L + G R +IWD G
Sbjct: 15 REVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTF---GFQIRTLEVEGLR--FTIWDIGG 69
Query: 69 QEKFHALGPIYYRNSNGAILVYDITDE---DSFRKGVEELFLD 108
Q+ Y+ ++ I V D D+ + R ++EL ++
Sbjct: 70 QKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVE 112
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.23
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 45 ATFLNKRLNINGNRVNLSIWDTAGQEKFHALGPIYYRNSNGAILVYDITDEDSFRKGVEE 104
+T L KR ++G + +++++ ++L N ++ YD++ + SF + +
Sbjct: 304 STSLRKREALDGEDIG-NVFNSISGCDLYSLSNFLLYLENSCVITYDVSLDCSFNEYNDP 362
Query: 105 LFLDLTREMLERQEHNTQTEVNRTS 129
L L RE + H T+ TS
Sbjct: 363 LITYLNREDVRSSLHATKASTALTS 387
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 0.30
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 12 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNIN--GNRVNLSIWDTAGQ 69
KV+L+G GK+S+ + + K L AT + ++ GN V L++WD GQ
Sbjct: 4 KVLLMGRSGSGKSSMR-SIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 70 EKF-----HALGPIYYRNSNGAILVYDITDED 96
E F A +RN I V+D+ +
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 28.3 bits (60), Expect = 0.53
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 94 DEDSFRKGVEELFLDLTREMLERQEHNTQTEVNRTSQXXXXXXXXXXQSTCCSGHRSS 151
D D+F ++ D+ REMLE +E +++ VNRT + + +G SS
Sbjct: 1194 DLDAFEHAWNKVMDDIQREMLE-EEQSSRDFVNRTKKKPRGKSTGTRKPRAIAGSSSS 1250
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 28.3 bits (60), Expect = 0.53
Identities = 8/38 (21%), Positives = 27/38 (71%)
Query: 81 RNSNGAILVYDITDEDSFRKGVEELFLDLTREMLERQE 118
++S ++ Y++ D+D++ + +++L D+ +++ E++E
Sbjct: 549 KSSFSEVMSYELKDDDNYNEELDKLVEDVRKKLQEKEE 586
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.9 bits (59), Expect = 0.70
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 4 TTGGARNLKVVLLGDGCVGKTSLL 27
+T G ++KV+LLG G GKT+++
Sbjct: 68 STSGGNDIKVLLLGAGDSGKTTIM 91
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 0.70
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 91 DITDEDSFRKGVEELFLDLTREMLERQEHNTQTEVNR 127
D TDED V ++ L ML+ EH Q E NR
Sbjct: 130 DGTDEDINSNSVNDVSLSSGETMLQFPEHEEQHECNR 166
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 95 EDSFRKGVEELFLDLTREMLERQEHNTQTEVNRTS 129
E SF+K V+E LT E+ E +E +E R++
Sbjct: 44 EPSFKKDVDEEIPSLTAELSEEEEGEYSSESGRST 78
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 2.8
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 31 IEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEKFHALGPIYYRNSNGAILVY 90
+ +FNEK + + + K LN+ R++ S+ + + HA ++SN IL+
Sbjct: 4 LRKRFNEKG----RQSGIQKMLNLKRARLHRSVREQESSSEVHANPEPDNQDSNAEILI- 58
Query: 91 DITDEDSFRKGVEELFLDLTRE 112
D+ E+ +K +EL L +E
Sbjct: 59 DVPKEER-QKRKQELKDQLLKE 79
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 82 NSNGAILVYDITDEDSFRKGVEELFLDLTRE 112
N A+L+ D+ + + F + LF DL R+
Sbjct: 127 NVKSAVLIVDLPNAEEFLVNIFRLFFDLARK 157
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 4.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 20 CVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVN 60
C+ + L ++ NE + T Q KR +N NR+N
Sbjct: 229 CLNIMTFLCEKSKELLNEHAIATKQLEKEEKRSRVNRNRIN 269
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 9 RNLKVVLLGDGCVGKTSLLLRYIED 33
+ ++VV+ GD VGK+SL+ I++
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQE 26
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 81 RNSNGAILVYDITDEDSFR 99
++SN AI V IT+E+SFR
Sbjct: 139 QSSNDAIPVIKITEENSFR 157
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 24.2 bits (50), Expect = 8.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 34 KFNEKHLTTLQATFLNKRLNI--NGNRVNLSIWDTAGQEK 71
++NE T A F + N+ N+ IWD AG++K
Sbjct: 53 QYNEHTAPTTVARFSPSGYYVASGDNQGNVRIWDCAGEDK 92
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,434
Number of Sequences: 5004
Number of extensions: 23152
Number of successful extensions: 107
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 38
length of query: 151
length of database: 2,362,478
effective HSP length: 67
effective length of query: 84
effective length of database: 2,027,210
effective search space: 170285640
effective search space used: 170285640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)
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