Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000681-TA|BGIBMGA000681-PA|IPR004145|Protein of unknown
function DUF243
         (489 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   1.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   1.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   1.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   1.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   8.4  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 191 YNYNQYKTSAASKYQEHYVQQQPTQVYKH 219
           YN N Y       +  H++QQQ  Q   H
Sbjct: 37  YNQNSYIPPGGDFFGNHHIQQQQLQYGYH 65


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 191 YNYNQYKTSAASKYQEHYVQQQPTQVYKH 219
           YN N Y       +  H++QQQ  Q   H
Sbjct: 37  YNQNSYIPPGGDFFGNHHIQQQQLQYGYH 65


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 191 YNYNQYKTSAASKYQEHYVQQQPTQVYKH 219
           YN N Y       +  H++QQQ  Q   H
Sbjct: 37  YNQNSYIPPGGDFFGNHHIQQQQLQYGYH 65


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 191 YNYNQYKTSAASKYQEHYVQQQPTQVYKH 219
           YN N Y       +  H++QQQ  Q   H
Sbjct: 37  YNQNSYIPPGGDFFGNHHIQQQQLQYGYH 65


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 197 KTSAASKYQEHYVQQQPTQVYKHFY 221
           KT    KY+  Y   Q  ++ K FY
Sbjct: 152 KTRTKDKYRVVYTDHQRVELEKEFY 176


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,371
Number of Sequences: 317
Number of extensions: 2914
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 489
length of database: 114,650
effective HSP length: 59
effective length of query: 430
effective length of database: 95,947
effective search space: 41257210
effective search space used: 41257210
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)