Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000681-TA|BGIBMGA000681-PA|IPR004145|Protein of unknown
function DUF243
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    30   0.63 
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   7.8  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    27   7.8  

>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 308 KYKNKEDSQAVINNIVNDYNKEQSVSFSG 336
           KYK   + QA I N+VN +NK +  +F G
Sbjct: 548 KYKEVHEKQAAIANMVNTFNKPKRNAFIG 576


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 33  HLGYDYKAPQTSYGYPSY 50
           HL Y Y++P+T Y Y  Y
Sbjct: 93  HLSYKYQSPETVYSYSWY 110


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 10  EAINDSIGPILGFTLAVALADVSHLGYDYKAPQTSYGYPSYQL 52
           E++ D     +G    +A   V   GY+YKA   S G  +Y+L
Sbjct: 153 ESLRDKNDDFVGTPFWMAPEVVKQTGYNYKADIWSLGITAYEL 195


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,656
Number of Sequences: 5004
Number of extensions: 52080
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 3
length of query: 489
length of database: 2,362,478
effective HSP length: 76
effective length of query: 413
effective length of database: 1,982,174
effective search space: 818637862
effective search space used: 818637862
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)