Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000681-TA|BGIBMGA000681-PA|IPR004145|Protein of unknown
function DUF243
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01890.1 68418.m00108 leucine-rich repeat transmembrane prote...    31   1.7  
At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)...    31   2.3  
At1g44085.1 68414.m05090 glycine-rich protein similar to glycine...    30   3.0  
At5g58210.3 68418.m07288 hydroxyproline-rich glycoprotein family...    29   7.0  
At5g58210.2 68418.m07287 hydroxyproline-rich glycoprotein family...    29   7.0  
At5g58210.1 68418.m07286 hydroxyproline-rich glycoprotein family...    29   7.0  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    29   9.2  

>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           (LRPKm1) - Malus domestica, EMBL:AF053127
          Length = 967

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 2   LQHFYKHREAINDSIGPILGFTLAVALADVSHLGYDYKAP 41
           L  F  H+ + ND+I PI+GF   + + D+S  G+  + P
Sbjct: 363 LSRFSLHKRSGNDTIMPIVGFLQGLRVLDLSSNGFTGELP 402


>At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)
           nearly identical to SH3 domain-containing protein 1
           [Arabidopsis thaliana] GI:16974676; contains Pfam
           profile PF00018: SH3 domain
          Length = 439

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/70 (22%), Positives = 32/70 (45%)

Query: 285 EVQDILVPKIEQKPPSKPEVFFVKYKNKEDSQAVINNIVNDYNKEQSVSFSGLDDSPQNV 344
           +  D+L  + + K     E  ++K KN E   A + + +    KE + +   +DD  QNV
Sbjct: 165 QATDVLRRRSKLKESDISEEAYIKLKNSESRLAELKSSMKTLGKEATKAMLEVDDQQQNV 224

Query: 345 FGSGAQTILD 354
                + +++
Sbjct: 225 TSQRLRALVE 234


>At1g44085.1 68414.m05090 glycine-rich protein similar to
           glycine-rich protein GI:18147 from [Chenopodium rubrum]
          Length = 90

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 119 NHASGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNG 155
           ++ +  GYY G  N A +G +  Y PY  T G G  G
Sbjct: 40  SYKNSGGYYQG--NQATNGNSGGYSPYQGTQGLGVGG 74


>At5g58210.3 68418.m07288 hydroxyproline-rich glycoprotein family
           protein 
          Length = 380

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 308 KYKNKEDSQAVINNIVNDYNKEQSVSFSGLDDSPQNVFGS 347
           K  +K+D +A++ + VN+Y    +  F  LD + + V GS
Sbjct: 47  KRLSKDDRRALVESFVNEYRATNAGRFPSLDATHKQVGGS 86


>At5g58210.2 68418.m07287 hydroxyproline-rich glycoprotein family
           protein 
          Length = 380

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 308 KYKNKEDSQAVINNIVNDYNKEQSVSFSGLDDSPQNVFGS 347
           K  +K+D +A++ + VN+Y    +  F  LD + + V GS
Sbjct: 47  KRLSKDDRRALVESFVNEYRATNAGRFPSLDATHKQVGGS 86


>At5g58210.1 68418.m07286 hydroxyproline-rich glycoprotein family
           protein 
          Length = 380

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 308 KYKNKEDSQAVINNIVNDYNKEQSVSFSGLDDSPQNVFGS 347
           K  +K+D +A++ + VN+Y    +  F  LD + + V GS
Sbjct: 47  KRLSKDDRRALVESFVNEYRATNAGRFPSLDATHKQVGGS 86


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 124 SGYYFGDANSAGSGLTNN--YYPYYSTSGAGFNGLY 157
           S YY+G  N++  G  NN   YPY S     +N  Y
Sbjct: 812 SSYYYGKYNNSTQGTFNNGPRYPYPSNGSQDYNRNY 847


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,896,003
Number of Sequences: 28952
Number of extensions: 252937
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 7
length of query: 489
length of database: 12,070,560
effective HSP length: 84
effective length of query: 405
effective length of database: 9,638,592
effective search space: 3903629760
effective search space used: 3903629760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)