GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000681-TA|BGIBMGA000681-PA|IPR004145|Protein of unknown
function DUF243
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0239 - 16099673-16100251                                         29   6.3  
07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445...    29   6.3  
10_08_0240 - 16106963-16107538                                         29   8.4  

>10_08_0239 - 16099673-16100251
          Length = 192

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 117 YRNHASGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNG 155
           Y    SGSGY  G  +S  S   N YY Y  +S AG  G
Sbjct: 82  YGGSGSGSGYGTGSGSSQTS--QNRYYSYGGSSSAGGAG 118


>07_03_0563 -
           19542116-19542217,19542631-19542712,19543823-19544595,
           19545207-19545296,19545612-19545689,19546112-19546207,
           19546285-19546365,19546587-19546787,19546875-19546967,
           19547052-19547116,19547684-19547715,19548844-19548956
          Length = 601

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 118 RNHASGSGYYFGDANSAGSGLTNNYYPYYS--TSGAGFNGLYY 158
           RN   G+G + G+ N+ GSG +N+   + +   +G+ FN ++Y
Sbjct: 506 RNGGGGNGGHPGEQNNDGSGFSNSGISFTTPRLAGSHFNYIFY 548


>10_08_0240 - 16106963-16107538
          Length = 191

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 117 YRNHASGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNG 155
           Y    SGSGY  G  +S  S   N YY Y  +S AG  G
Sbjct: 82  YGGSGSGSGYGSGSGSSQTS--QNGYYGYGGSSSAGGAG 118


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,564,373
Number of Sequences: 37544
Number of extensions: 301072
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 9
length of query: 489
length of database: 14,793,348
effective HSP length: 85
effective length of query: 404
effective length of database: 11,602,108
effective search space: 4687251632
effective search space used: 4687251632
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 62 (29.1 bits)