GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000681-TA|BGIBMGA000681-PA|IPR004145|Protein of unknown
function DUF243
         (489 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71185-6|CAI46563.1|  286|Caenorhabditis elegans Hypothetical pr...    30   3.2  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z81491-5|CAB04021.1|  225|Caenorhabditis elegans Hypothetical pr...    29   7.4  
U80445-1|AAB37794.1|  855|Caenorhabditis elegans Hypothetical pr...    29   7.4  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    29   7.4  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    29   7.4  
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    29   9.8  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    29   9.8  
Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical pr...    29   9.8  

>Z71185-6|CAI46563.1|  286|Caenorhabditis elegans Hypothetical
           protein C35A5.10 protein.
          Length = 286

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 117 YRNHASGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNGLYYPIXXXXXXXXXXXXXPIY 176
           Y  +  GS  Y   A+S  S   NNY PY + +   +NG Y P              P+ 
Sbjct: 99  YVAYNMGSNAYSPCASSCCSNNNNNYNPYINNN---YNGNYNPYGTSNGGYNAYGTIPVN 155

Query: 177 STIGADLSQSLIPTYNYNQYKTSAASKYQEHYVQQQ 212
             + +  + +     N NQY    A ++   Y   Q
Sbjct: 156 VNVPSSSTNT-----NVNQYLPYGAQQFTGTYQNGQ 186


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
           protein C18H2.5 protein.
          Length = 1139

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 3/45 (6%)

Query: 272 EKTIVYVLSKKPEEV--QDILVPKIEQKPP-SKPEVFFVKYKNKE 313
           ++T++ V +KKPEE+   D+ V + +QK    K +  ++KY+NK+
Sbjct: 858 DRTLLNVQNKKPEEIIGTDLDVLRADQKAKIEKIKNIYLKYQNKK 902


>Z81491-5|CAB04021.1|  225|Caenorhabditis elegans Hypothetical
           protein D1086.5 protein.
          Length = 225

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 272 EKTIVYVLSKKPEEVQDILVPKIEQKPPSKPEVFFVKYKNK 312
           EKT+  V+ K P++V + +   ++ K P K +   ++ K+K
Sbjct: 114 EKTLKEVIEKTPDQVSECVKDYLKNKNPDKVDCVSIQTKSK 154


>U80445-1|AAB37794.1|  855|Caenorhabditis elegans Hypothetical
           protein C50F2.3 protein.
          Length = 855

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 281 KKPEEVQDILVPKIEQKPPSKPEVFFVKYKNKEDSQAVINNIVNDYNK 328
           KK E  +D+    +E  PP+  +  F+ Y   E+   +  + ++ YN+
Sbjct: 575 KKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLARHALSIYNR 622


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 281 KKPEEVQDILVPKIEQKPPSKPEVFFVKYKNKEDSQAV 318
           +KP+E+Q+I  PK  +K P KP+      K  E  Q +
Sbjct: 946 EKPQEIQEI--PKKSEKAPEKPQEIEKSPKKSEKRQEI 981


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 281 KKPEEVQDILVPKIEQKPPSKPEVFFVKYKNKEDSQAV 318
           +KP+E+Q+I  PK  +K P KP+      K  E  Q +
Sbjct: 944 EKPQEIQEI--PKKSEKAPEKPQEIEKSPKKSEKRQEI 979


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 293 KIEQKPPSKPEVFFVKYKNKEDSQA 317
           K +Q+PPSK E  F  YK K +S A
Sbjct: 563 KSKQQPPSKIETRFNTYKKKSESSA 587


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 293 KIEQKPPSKPEVFFVKYKNKEDSQA 317
           K +Q+PPSK E  F  YK K +S A
Sbjct: 567 KSKQQPPSKIETRFNTYKKKSESSA 591


>Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical
           protein C01G10.5 protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 126 YYFGDANSAGSGLTNNYYPYYSTSGAGFNGLYY 158
           YY+ + N+ G    N Y  YY       NG YY
Sbjct: 24  YYYPNNNNNGYNYNNGYTTYYYYPNNNNNGYYY 56


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,439,235
Number of Sequences: 27539
Number of extensions: 274854
Number of successful extensions: 650
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 10
length of query: 489
length of database: 12,573,161
effective HSP length: 84
effective length of query: 405
effective length of database: 10,259,885
effective search space: 4155253425
effective search space used: 4155253425
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)