Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000680-TA|BGIBMGA000680-PA|IPR008147|Glutamine
synthetase, beta-Grasp, IPR008146|Glutamine synthetase, catalytic
region
         (422 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   6.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 290  EEYGVIVTFDPKPVQDWNG 308
            +++ + VT+ P P +DWNG
Sbjct: 989  DQHTLKVTWKPPPREDWNG 1007


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 366 ASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDP 407
           A+  DFS GV N   S ++  +   ++   LED      C+P
Sbjct: 206 ATPTDFSMGVKNNHVSSKVEGNGVHEENSPLEDN---IKCEP 244


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,105
Number of Sequences: 429
Number of extensions: 6672
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 422
length of database: 140,377
effective HSP length: 59
effective length of query: 363
effective length of database: 115,066
effective search space: 41768958
effective search space used: 41768958
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)