Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000680-TA|BGIBMGA000680-PA|IPR008147|Glutamine
synthetase, beta-Grasp, IPR008146|Glutamine synthetase, catalytic
region
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 362 e-100
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 356 2e-98
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 346 2e-95
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 322 4e-88
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 41 0.002
03_05_0174 + 21509202-21509690,21509696-21510133,21510176-21510643 31 1.3
04_04_0683 - 27234137-27234486,27234645-27234756,27234889-272349... 30 4.0
06_03_0954 - 26281937-26282143,26282232-26282286,26282430-262824... 29 5.3
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82... 29 9.3
07_03_0252 - 15846143-15848473 29 9.3
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 362 bits (891), Expect = e-100
Identities = 171/312 (54%), Positives = 214/312 (68%), Gaps = 8/312 (2%)
Query: 113 DQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESN 172
D LP WN+DGSST QA G +S+ L P+AI+KDPFR+GN+ILVMCD Y EP +N
Sbjct: 46 DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTN 105
Query: 173 NRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXX-YYCGVGANK 229
R + + + + +EPW+GIEQEY LL D+ YYCG+GA+K
Sbjct: 106 KRHNAAKIFSSPEVASEEPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADK 165
Query: 230 VFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLA 289
F RD+V++HY+ CLYAG+ I+G N EVMP QWEFQVGPS+G+ AGD +WVARYIL R+
Sbjct: 166 SFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDQVWVARYILERIT 225
Query: 290 EEYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYD 348
E GV+V+FDPKP+ DWNG+GAHTN+STK MRND G I+ AI+KL H +HI Y
Sbjct: 226 EIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEIIKSAIEKLKLRHKEHISAY- 284
Query: 349 PRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDPY 408
G+ NERRLTG HETA IN FS GVANRG+S+R+ R ++ KGY EDRRPASN DPY
Sbjct: 285 ---GEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPY 341
Query: 409 SVIDALMRTCIL 420
V + T I+
Sbjct: 342 IVTSMIAETTII 353
Score = 36.3 bits (80), Expect = 0.046
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 45 DKILATYIWIDGSGEHLRCKDRTLN 69
+KI+A YIWI GSG LR K RTL+
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLS 41
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 356 bits (876), Expect = 2e-98
Identities = 190/388 (48%), Positives = 237/388 (61%), Gaps = 22/388 (5%)
Query: 39 DLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDKLSGILEDYNARAKSNAREWK 98
DL DK++A YIWI HL F+ +L + A S
Sbjct: 13 DLSESTDKVIAEYIWI-----HLILNHHQFLFMVV--------LLVSLSQNAGSLLSILH 59
Query: 99 LKNEVHFLIHYYPKDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVM 158
LK EV+ + D LP WNFDGSST QA G +S+ L P+AI++DPFR+G +ILVM
Sbjct: 60 LK-EVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVM 118
Query: 159 CDTYKYNMEPTESNNRISCQEAYDK--CKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXX 216
CD Y N EP +NNR + + K +EPW+GIEQEY LL +
Sbjct: 119 CDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYP 178
Query: 217 XXXX-YYCGVGANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAG 275
YYC GA+K + RD+V+AHY+ CL+AG+ I+G NAEVMP QWEFQ+GP +GV AG
Sbjct: 179 GPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVMPGQWEFQIGPVVGVSAG 238
Query: 276 DDLWVARYILHRLAEEYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAID 334
D +WVARYIL R+ E GV+V+FDPKP+ DWNG+GAHTN+STK MR++ G I+KAI
Sbjct: 239 DHVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRSNGGYEVIKKAIK 298
Query: 335 KLSKVHMKHIKVYDPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKG 394
KL H +HI Y G NERRLTG HETA IN+F GVANRG+S+R+ R +D KG
Sbjct: 299 KLGMRHREHIAAY----GDGNERRLTGRHETADINNFVWGVANRGASVRVGRDTEKDGKG 354
Query: 395 YLEDRRPASNCDPYSVIDALMRTCILNE 422
Y EDRRPASN DPY V + T IL E
Sbjct: 355 YFEDRRPASNMDPYLVTAMIAETTILWE 382
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 346 bits (850), Expect = 2e-95
Identities = 168/311 (54%), Positives = 206/311 (66%), Gaps = 14/311 (4%)
Query: 113 DQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESN 172
D LP WN+DGSST QA G +S+ L P+AI+KDPFRRG++ILVMCD Y EP +N
Sbjct: 46 DVSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTN 105
Query: 173 NRISCQEAYDK--CKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKV 230
R S + + + PW+GIEQEY LL D+ YYC GA K
Sbjct: 106 KRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPGP-------YYCAAGAEKA 158
Query: 231 FARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAE 290
F RD+V+AHY+ C+YAG+ I+G N EVMP QWEFQVGPS+G+ A D +WVARYIL R+ E
Sbjct: 159 FGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGIAAADQVWVARYILERVTE 218
Query: 291 EYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYDP 349
GV+++ DPKP+ DWNG+GAHTNFSTK MR G I+KAIDKL+ H +HI Y
Sbjct: 219 VAGVVLSLDPKPIPGDWNGAGAHTNFSTKSMREPGGYEVIKKAIDKLALRHKEHIAAY-- 276
Query: 350 RGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDPYS 409
G+ NERRLTG HETA IN F GVANRG+SIR+ R ++ KGY EDRRPASN DPY
Sbjct: 277 --GEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 334
Query: 410 VIDALMRTCIL 420
V + T +L
Sbjct: 335 VTGMIAETTLL 345
Score = 35.9 bits (79), Expect = 0.061
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 44 ADKILATYIWIDGSGEHLRCKDRTL 68
+DKI+A YIW+ GSG LR K RT+
Sbjct: 16 SDKIIAEYIWVGGSGIDLRSKARTV 40
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 322 bits (790), Expect = 4e-88
Identities = 166/319 (52%), Positives = 202/319 (63%), Gaps = 12/319 (3%)
Query: 112 KDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTES 171
+D +LP WN+DGSST QA G +S+ L P+AI+KDPFR GN+ILVMCDTY EP +
Sbjct: 844 EDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPT 903
Query: 172 NNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXX-YYCGVGAN 228
N R + + K PWFGIEQEY LL D+ YYC VG++
Sbjct: 904 NKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSD 963
Query: 229 KVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRL 288
K F RD+ +AHY+ CLYAG+ I+GTN EVMP QWE+QVGPS+G+ AGD +W++RYIL R+
Sbjct: 964 KSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERI 1023
Query: 289 AEEYGVIVTFDPKPVQDWNGSGAHTNFS-----TKKMRNDNGIIEIEKAIDKLSKVHMKH 343
E+ GV++T DPKP+Q + TK MR D G I+KAI LS H H
Sbjct: 1024 TEQAGVVLTLDPKPIQADSVICFVIRLRLILQITKSMREDGGFEVIKKAILNLSLRHDLH 1083
Query: 344 IKVYDPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 403
I Y G+ NERRLTGLHETASI++FS GVANRG SIR+ R KGYLEDRRPAS
Sbjct: 1084 ISAY----GEGNERRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPAS 1139
Query: 404 NCDPYSVIDALMRTCILNE 422
N DPY V L T IL E
Sbjct: 1140 NMDPYVVTALLAETTILWE 1158
Score = 36.3 bits (80), Expect = 0.046
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 20 VLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLN 69
V T + V L + P DKI+A YIW+ G+G LR K RT++
Sbjct: 792 VSTETTGVVTRMEQLLNMDTTPF-TDKIIAEYIWVGGTGIDLRSKSRTIS 840
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 232 ARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAEE 291
A +++ Y A + + +AE Q+E + + A D L AR I+ +A +
Sbjct: 560 ASSVLQEVYTSLKAAEIVVEQLHAESGKGQFEIALKYVLCTLAADKLIYAREIIKSVARK 619
Query: 292 YGVIVTFDPKPVQDWNGSGAHTNFS 316
+G++ TF PKP + GSG+H + S
Sbjct: 620 HGLLATFLPKPDLNDIGSGSHVHLS 644
>03_05_0174 + 21509202-21509690,21509696-21510133,21510176-21510643
Length = 464
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 268 PSIGVHAGDDLWVARYILHRLAEEY----GVIVTFDPKPVQDWNGSGAHT 313
P + DD V+RY+L R+ ++ GVIV DP V W HT
Sbjct: 9 PGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTPLADHT 58
>04_04_0683 -
27234137-27234486,27234645-27234756,27234889-27234961,
27235071-27235491,27236148-27236403
Length = 403
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 46 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDKLSGILEDYNARAKSN 93
K A+++ G+G+ L C DR LN P DKLS ++ A S+
Sbjct: 309 KCQASFMPKPGNGKDLACSDRALNLF-MLPPDKLSMLVPPQYANTDSD 355
>06_03_0954 -
26281937-26282143,26282232-26282286,26282430-26282482,
26282587-26282663,26282734-26282857,26282947-26283072,
26283463-26283616,26283709-26283817,26283911-26283974,
26284782-26284898
Length = 361
Score = 29.5 bits (63), Expect = 5.3
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 308 GSGAHTNF--STKKMRNDNGIIEIEKAIDKLSKVH-MKHIKVYDPRGGKDNERRLTGLHE 364
G+ AH F + MR G E++ DK++++ M ++ PRG N++ E
Sbjct: 88 GNAAHKAFFRMDEMMRGQRGWRELQALGDKINQISGMIEGLIWSPRGSDSNDQHDDWAFE 147
Query: 365 TASINDFSAGVANRGSSIRIPRS 387
+DF+ + + I R+
Sbjct: 148 EGPHSDFAGPTCGSTACVAIVRN 170
>10_01_0062 -
818396-818538,819482-819693,819936-820420,820540-820696,
820787-820924,821127-821703,821978-822018,822679-822809
Length = 627
Score = 28.7 bits (61), Expect = 9.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 108 HYYPKDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 147
+Y+ +DLP W F G+ +AD D Y + R I D
Sbjct: 115 YYFQMYYDDLPFWGFIGTKPEKADA--GDKYYLYRHIIFD 152
>07_03_0252 - 15846143-15848473
Length = 776
Score = 28.7 bits (61), Expect = 9.3
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 268 PSIGVHAGDDLWVARYILHRLAEE----YGVIVTFDPKPVQDWNGSGAH 312
P + DD V+RY+L RL ++ +GVI DP W AH
Sbjct: 10 PGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWMLLAAH 58
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,337,943
Number of Sequences: 37544
Number of extensions: 596995
Number of successful extensions: 1129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 15
length of query: 422
length of database: 14,793,348
effective HSP length: 84
effective length of query: 338
effective length of database: 11,639,652
effective search space: 3934202376
effective search space used: 3934202376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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