Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000680-TA|BGIBMGA000680-PA|IPR008147|Glutamine
synthetase, beta-Grasp, IPR008146|Glutamine synthetase, catalytic
region
(422 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.) 287 2e-77
SB_15305| Best HMM Match : Gln-synt_C (HMM E-Value=0) 33 0.33
SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8) 31 1.3
SB_58915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_37201| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_27040| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7) 29 7.1
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004) 29 7.1
SB_14142| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
SB_6850| Best HMM Match : TPR_2 (HMM E-Value=1.7e-08) 29 9.4
>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 287 bits (703), Expect = 2e-77
Identities = 131/208 (62%), Positives = 155/208 (74%), Gaps = 3/208 (1%)
Query: 111 PKDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTE 170
PK EDLPIWNFDGSST QA+G NSD YL P I+KDPFR GN+ILV+C+TY+++ +PT
Sbjct: 52 PKSHEDLPIWNFDGSSTAQAEGCNSDVYLHPINIFKDPFRGGNNILVLCETYQFDHKPTR 111
Query: 171 SNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGAN 228
+N R +C + + K K PWFGIEQEY LLD D YYCGVG N
Sbjct: 112 TNKRKTCFDVMESEKVKPHRPWFGIEQEYTLLDIDGHPLGWPKGGFPGPQGPYYCGVGTN 171
Query: 229 KVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRL 288
KVF R++VEAHYR CLYAGV IAGTNAEVMP+QWEFQVGP G+ GD LWVARY+LHR+
Sbjct: 172 KVFGREIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQVGPCEGIEMGDHLWVARYLLHRV 231
Query: 289 AEEYGVIVTFDPKPVQ-DWNGSGAHTNF 315
AE++GVIVTFDPKP+ DWNG+GAH N+
Sbjct: 232 AEDFGVIVTFDPKPMPGDWNGAGAHCNY 259
Score = 150 bits (363), Expect = 2e-36
Identities = 67/107 (62%), Positives = 85/107 (79%)
Query: 315 FSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYDPRGGKDNERRLTGLHETASINDFSAG 374
FST++MR + G++ I AI+KL K H HI+ YDP G+DN RRLTG HET+ I+ FS G
Sbjct: 294 FSTEEMREEGGMVHIYTAIEKLEKNHDYHIRSYDPNEGRDNARRLTGAHETSRIDQFSHG 353
Query: 375 VANRGSSIRIPRSVAEDKKGYLEDRRPASNCDPYSVIDALMRTCILN 421
VANRG+S+RIPR AED KGYLEDRRP+SNCDPYSV +A++RT +L+
Sbjct: 354 VANRGASVRIPRQCAEDGKGYLEDRRPSSNCDPYSVTEAIVRTTVLD 400
Score = 49.6 bits (113), Expect = 5e-06
Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 33 LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKD 77
+L +Y L D++ A YIW+DGSGE +RCK RTL+ PK+ +D
Sbjct: 14 VLEKYQRLD-QGDRVQALYIWVDGSGEGIRCKSRTLDKPPKSHED 57
>SB_15305| Best HMM Match : Gln-synt_C (HMM E-Value=0)
Length = 237
Score = 33.5 bits (73), Expect = 0.33
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 240 YRCCLYAGVPIAGTNAEVMPSQWEFQVGPSI-GVHAGDDLWVARYILHRLAEEYGVIVTF 298
Y C G+P+ +E P Q E + + A D+ + ++ +A ++G+ F
Sbjct: 86 YSACEVQGLPVRTAISEYAPGQVELTLEHRFDALQAVDEGVRYKRLVKGVANKHGMQACF 145
Query: 299 DPKPVQDWNGSGAHTNFSTKKMRNDN 324
KP D GSG H + S +N
Sbjct: 146 MAKPFGDQAGSGMHMHVSLADEHGNN 171
>SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)
Length = 349
Score = 31.5 bits (68), Expect = 1.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 154 HILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWF 191
HILV+ + + P ++N +S Q ++C D EPWF
Sbjct: 148 HILVISNAANL-LTPEKANIMLSSQTYKEECTDTEPWF 184
>SB_58915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.5 bits (63), Expect = 5.4
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 305 DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYDPRGGKDN-ERRLTGLH 363
+WN SG H +T ++D ++ I+ +LSK + K+ D + ++ ER T
Sbjct: 280 EWN-SGGHGWNTTASFQDDEDLLGIDDFFRELSKCNPKNCNSTDYKESYNSCERTETNYE 338
Query: 364 ETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASN 404
ET + + +R R P E + G D+ +N
Sbjct: 339 ETTRRKENDVSIMSRKRE-RTP-DAFEWRDGITRDKEAQAN 377
>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1652
Score = 29.5 bits (63), Expect = 5.4
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 3 DTAHTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATY-IWIDGSGEHL 61
D +E++ ++G SP AV S L RYN + K+ A + G
Sbjct: 1425 DKVRQLVEEDKHFVNGGTARESPVAVKSLDLGERYNASGVTIVKVTAIHDEHTQGKKYKT 1484
Query: 62 R-CKDRTLNFIPKAPKDKLSGILEDYNARAKSNAREWKLKNEVHFLIHYYPKDQEDLP 118
+ K+ ++ K KD++ D + + + + + NEV L + K Q +P
Sbjct: 1485 KVMKNVSIQVAEKVVKDRVLAAERDKDVITQGQMKPYGVVNEVVLLPANWAKGQSVVP 1542
>SB_37201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 21 LTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDKL 79
LT S L L + +DL P + T +W D + +++ + LN +P+ D++
Sbjct: 137 LTGSNKKTLLSQLPDKLHDLLTPDSRDKVTQLWRDFNNIYIQITNMELNILPEIIADQV 195
>SB_27040| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)
Length = 276
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 21 LTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDKL 79
LT S L L + +DL P + T +W D + +++ + LN +P+ D++
Sbjct: 113 LTGSNKKTLLSQLPDKLHDLLTPDSRDKVTQLWRDFNNIYIQITNMELNILPEIIADQV 171
>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
Length = 969
Score = 29.1 bits (62), Expect = 7.1
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 330 EKAIDKLSKVHMKHIKVYDPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVA 389
E +D L K +K+ D GGKD + + + + + + + +++P VA
Sbjct: 861 EYILDLLGTCEQKLLKLMDDLGGKDISDVMKEMEDFEFRSSMESKLPQHNTRVKLP-VVA 919
Query: 390 EDKKGYLEDRRPASNCDPYS 409
E GY +D + D S
Sbjct: 920 ERTAGYDDDEESGEDEDVLS 939
>SB_14142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 28.7 bits (61), Expect = 9.4
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 350 RGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPR---SVAEDKKGYL---EDRRPAS 403
R G ++R L +I VANR SS R PR S+ + K+ Y ED
Sbjct: 274 REGMISKRNLLHREGLITITQSDLSVANRHSSRRFPRRQSSICQQKQLYYIKDEDSAVIQ 333
Query: 404 NCDPYSVI 411
C Y+V+
Sbjct: 334 KCAKYNVL 341
>SB_6850| Best HMM Match : TPR_2 (HMM E-Value=1.7e-08)
Length = 523
Score = 28.7 bits (61), Expect = 9.4
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 32 TLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDKLSGILEDYNARAK 91
TL + +L P+ +L TY ++ +HLR ++ L++I KA D ++E Y + +
Sbjct: 20 TLTGKVGELESPS-ALLWTYFFLSQHYDHLRDTEKALDYINKA-IDHTPTLIEAYMVKGR 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.136 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,484,754
Number of Sequences: 59808
Number of extensions: 670493
Number of successful extensions: 1256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 14
length of query: 422
length of database: 16,821,457
effective HSP length: 84
effective length of query: 338
effective length of database: 11,797,585
effective search space: 3987583730
effective search space used: 3987583730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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