Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000680-TA|BGIBMGA000680-PA|IPR008147|Glutamine
synthetase, beta-Grasp, IPR008146|Glutamine synthetase, catalytic
region
(422 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 428 e-120
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 428 e-120
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 376 e-104
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 375 e-104
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 374 e-104
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 320 9e-88
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 428 bits (1055), Expect = e-120
Identities = 200/313 (63%), Positives = 231/313 (73%), Gaps = 1/313 (0%)
Query: 109 YYPKDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEP 168
+ P D E LPIWNFDGSST QA+G +SD YL P AIY DPFR+G + LVMC+TY +P
Sbjct: 51 FEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPDPFRQGKNKLVMCETYDNKKKP 110
Query: 169 TESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGAN 228
T +N R C+E +K D PWFG+EQEY LLD D YYCGVGAN
Sbjct: 111 TATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPFGWPKNGFPGPQGPYYCGVGAN 170
Query: 229 KVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRL 288
KV+ RD+VEAHYR CLYAG+ I+GTNAEVMP QWEFQVGP G+ GD LWVARY+L R+
Sbjct: 171 KVYGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVGPCEGIQMGDQLWVARYLLQRV 230
Query: 289 AEEYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVY 347
AEE+GVI +FD KP++ DWNG+G HTNFST KMRN GI EI AI+KLS VH +HI Y
Sbjct: 231 AEEFGVIASFDCKPIKGDWNGAGCHTNFSTDKMRNPGGIDEIMSAINKLSLVHPQHIAYY 290
Query: 348 DPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDP 407
DP GGKDNERRLTGLHETASI+ FS GVA+R SSIRIPRS +D GY EDRRP+SNCDP
Sbjct: 291 DPHGGKDNERRLTGLHETASIDKFSYGVASRASSIRIPRSTDDDGYGYFEDRRPSSNCDP 350
Query: 408 YSVIDALMRTCIL 420
Y+V AL+RT L
Sbjct: 351 YTVTGALVRTVCL 363
Score = 41.9 bits (94), Expect = 8e-04
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 49 ATYIWIDGSGEHLRCKDRTLNFIPKAPK 76
A YIWIDGSGE++R K RT +F P P+
Sbjct: 30 ALYIWIDGSGENIRAKTRTFDFEPTDPE 57
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 428 bits (1055), Expect = e-120
Identities = 200/313 (63%), Positives = 231/313 (73%), Gaps = 1/313 (0%)
Query: 109 YYPKDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEP 168
+ P D E LPIWNFDGSST QA+G +SD YL P AIY DPFR+G + LVMC+TY +P
Sbjct: 54 FEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPDPFRQGKNKLVMCETYDNKKKP 113
Query: 169 TESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGAN 228
T +N R C+E +K D PWFG+EQEY LLD D YYCGVGAN
Sbjct: 114 TATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPFGWPKNGFPGPQGPYYCGVGAN 173
Query: 229 KVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRL 288
KV+ RD+VEAHYR CLYAG+ I+GTNAEVMP QWEFQVGP G+ GD LWVARY+L R+
Sbjct: 174 KVYGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVGPCEGIQMGDQLWVARYLLQRV 233
Query: 289 AEEYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVY 347
AEE+GVI +FD KP++ DWNG+G HTNFST KMRN GI EI AI+KLS VH +HI Y
Sbjct: 234 AEEFGVIASFDCKPIKGDWNGAGCHTNFSTDKMRNPGGIDEIMSAINKLSLVHPQHIAYY 293
Query: 348 DPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDP 407
DP GGKDNERRLTGLHETASI+ FS GVA+R SSIRIPRS +D GY EDRRP+SNCDP
Sbjct: 294 DPHGGKDNERRLTGLHETASIDKFSYGVASRASSIRIPRSTDDDGYGYFEDRRPSSNCDP 353
Query: 408 YSVIDALMRTCIL 420
Y+V AL+RT L
Sbjct: 354 YTVTGALVRTVCL 366
Score = 41.9 bits (94), Expect = 8e-04
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 49 ATYIWIDGSGEHLRCKDRTLNFIPKAPK 76
A YIWIDGSGE++R K RT +F P P+
Sbjct: 33 ALYIWIDGSGENIRAKTRTFDFEPTDPE 60
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 376 bits (926), Expect = e-104
Identities = 167/318 (52%), Positives = 222/318 (69%), Gaps = 3/318 (0%)
Query: 107 IHYYPKDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNM 166
I+ P+ + PIWN+DGSST QADG NSD YL P A++ DPF G ++LVMCDT + M
Sbjct: 51 INTKPQYLSEYPIWNYDGSSTGQADGLNSDRYLRPVAVFPDPFLGGLNVLVMCDTLDHEM 110
Query: 167 EPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVG 226
+PT +N+R C E K D +PWFG+EQEY+++D D YYCG+G
Sbjct: 111 KPTATNHRQMCAELMKKVSDQQPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGIG 170
Query: 227 ANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILH 286
A++ F R++VE HYR CL+AG+ I G+NAEV P QWEFQ+G +G+ GD LW+ARYILH
Sbjct: 171 ADRAFGREVVETHYRACLHAGITIFGSNAEVTPGQWEFQIGTCLGIEMGDQLWMARYILH 230
Query: 287 RLAEEYGVIVTFDPKP---VQDWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKH 343
R+AE++GV V+ DPKP + DWNG+G HTNFST MR +G+ I A++ L K H +
Sbjct: 231 RVAEQFGVCVSLDPKPRVTMGDWNGAGCHTNFSTIDMRRPDGLETIIAAMEGLKKTHSEA 290
Query: 344 IKVYDPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 403
+KVYDP GG DN RRLTG HET+ + FS G+ANR S+RIPR VA++ +GYLEDRRP+S
Sbjct: 291 MKVYDPNGGHDNLRRLTGRHETSQADQFSWGIANRACSVRIPRQVADEGRGYLEDRRPSS 350
Query: 404 NCDPYSVIDALMRTCILN 421
NCDPY V ++++ ++N
Sbjct: 351 NCDPYLVTAMIVKSVLIN 368
Score = 50.0 bits (114), Expect = 3e-06
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 29 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPK 73
L + + + LP K ATY+WIDG+GEHLR K RT+N P+
Sbjct: 12 LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQ 56
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 375 bits (923), Expect = e-104
Identities = 171/303 (56%), Positives = 214/303 (70%), Gaps = 3/303 (0%)
Query: 111 PKDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTE 170
PK ED PIWN+DGSST QA G +SD YL P A Y DPF G + LVMCDT + M+PT
Sbjct: 55 PKRIEDYPIWNYDGSSTGQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTA 114
Query: 171 SNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKV 230
+++R +C E + +D PWFG+EQEY+++D D YYC VGA++
Sbjct: 115 TSHRQACAEIMHEIRDTRPWFGMEQEYLIVDRDEHPLGWPKHGFPDPQGKYYCSVGADRA 174
Query: 231 FARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAE 290
F R++VE HYR CL+AG+ I GTNAEV P QWEFQ+G G+ GD LW++RYILHR+AE
Sbjct: 175 FGREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMSRYILHRVAE 234
Query: 291 EYGVIVTFDPKP---VQDWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVY 347
++GV V+ DPKP + DWNG+G HTNFST +MR GI IE A+ L + H++ +KVY
Sbjct: 235 QFGVCVSLDPKPKVTMGDWNGAGCHTNFSTAEMRAPGGIAAIEAAMTGLKRTHLEAMKVY 294
Query: 348 DPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDP 407
DP GG+DN RRLTG HET+S + FS GVANRG SIRIPR VA ++KGYLEDRRP+SNCDP
Sbjct: 295 DPHGGEDNLRRLTGRHETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPSSNCDP 354
Query: 408 YSV 410
Y V
Sbjct: 355 YQV 357
Score = 46.0 bits (104), Expect = 5e-05
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 29 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKD 77
L ++ ++ L KI ATY+WIDG+GE+LR K RT + +PK +D
Sbjct: 12 LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIED 60
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 374 bits (920), Expect = e-104
Identities = 166/315 (52%), Positives = 222/315 (70%), Gaps = 3/315 (0%)
Query: 111 PKDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTE 170
P+ + PIWN+DGSST QA+G NSD YL P A++ DPF +G+++LVMC+T M+PT
Sbjct: 55 PQYLSEYPIWNYDGSSTGQAEGLNSDRYLRPVAVFPDPFLQGHNVLVMCETLDETMKPTA 114
Query: 171 SNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKV 230
+N+R +C K + PWFG+EQEY+++D D YYCGVGA++
Sbjct: 115 TNHRQNCAAIMKKVAEHHPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGVGADRA 174
Query: 231 FARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAE 290
F R++VE HYR CL+AG+ I GTNAEV P QWEFQ+G G+ GD LW+ARYILHR+AE
Sbjct: 175 FGREVVETHYRACLHAGINIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMARYILHRVAE 234
Query: 291 EYGVIVTFDPKP---VQDWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVY 347
++GV V+ DPKP + DWNG+G HTNFST +MR NG+ I +A+ L + H + + VY
Sbjct: 235 QFGVCVSLDPKPKVTMGDWNGAGCHTNFSTIEMRRPNGLNAIFEAMKGLERTHSEAMSVY 294
Query: 348 DPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDP 407
DP GG+DN RRLTG HET+ + FS G+ANR SIRIPR VA++ KGYLEDRRP+SNCDP
Sbjct: 295 DPNGGRDNLRRLTGRHETSQADKFSWGIANRACSIRIPRQVADETKGYLEDRRPSSNCDP 354
Query: 408 YSVIDALMRTCILNE 422
Y V ++++C+L++
Sbjct: 355 YLVTAMIVKSCLLSD 369
Score = 47.2 bits (107), Expect = 2e-05
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 29 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPK 73
L + + + LP K ATY+WIDG+GE LR K RT N P+
Sbjct: 12 LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQ 56
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 320 bits (787), Expect = 9e-88
Identities = 144/282 (51%), Positives = 196/282 (69%), Gaps = 5/282 (1%)
Query: 109 YYPKDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEP 168
+ PK DLPIWNFDG+ST Q+ G SD Y+ P A+Y+DPFR G + + +C+T ++ +P
Sbjct: 54 FEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPFRPGPNKIALCETLTHDNKP 113
Query: 169 TESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGAN 228
+N R C + +K KD EPWFG+EQE+ LL +D YYCGVG++
Sbjct: 114 HPTNTRQQCVDNMEKAKDQEPWFGMEQEFTLLGADKHPYNWPVNGFPAPQGPYYCGVGSD 173
Query: 229 KVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRL 288
+VF R ++EAHYR C+YAG+ I+G+N E MPSQ+E+QVGP G+ GD LWV+RYILHR+
Sbjct: 174 RVFGRHILEAHYRACMYAGIKISGSNVESMPSQFEYQVGPCEGIEMGDQLWVSRYILHRI 233
Query: 289 AEEYGVIVTFDPKPV-QDWNGSGAHTNFSTKKMR----NDNGIIEIEKAIDKLSKVHMKH 343
E+YGV+ + DPKPV +W+G+G H NFST MR + G IE+A+ KLSKVHM H
Sbjct: 234 CEDYGVVCSLDPKPVLGEWSGAGCHLNFSTNVMRTPCEDGTGWKAIEEAVVKLSKVHMHH 293
Query: 344 IKVYDPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIP 385
I YDP GG+DNERRL G ++T +++ FS+GVA+R +S+RIP
Sbjct: 294 IAYYDPHGGRDNERRLIGANQTETVDAFSSGVADREASVRIP 335
Score = 36.7 bits (81), Expect = 0.031
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 51 YIWIDGSGEHLRCKDRTLNFIPKAPKD 77
YIWID + E++R K +T +F PK P D
Sbjct: 35 YIWIDATQENMRGKTKTFDFEPKTPSD 61
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.136 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,328,276
Number of Sequences: 27539
Number of extensions: 509104
Number of successful extensions: 1080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 12
length of query: 422
length of database: 12,573,161
effective HSP length: 83
effective length of query: 339
effective length of database: 10,287,424
effective search space: 3487436736
effective search space used: 3487436736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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