Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000680-TA|BGIBMGA000680-PA|IPR008147|Glutamine
synthetase, beta-Grasp, IPR008146|Glutamine synthetase, catalytic
region
(422 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48470.1 68414.m05418 glutamine synthetase, putative similar ... 359 1e-99
At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to... 355 3e-98
At5g37600.1 68418.m04529 glutamine synthetase, putative similar ... 353 1e-97
At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to... 353 1e-97
At5g16570.1 68418.m01939 glutamine synthetase, putative similar ... 352 2e-97
At1g66200.1 68414.m07514 glutamine synthetase, putative similar ... 348 4e-96
At3g53180.1 68416.m05860 glutamine synthetase, putative similar ... 43 4e-04
At4g22880.1 68417.m03304 leucoanthocyanidin dioxygenase, putativ... 31 1.4
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 31 1.4
At1g20530.1 68414.m02558 hypothetical protein 30 2.5
At5g09400.1 68418.m01089 potassium transporter family protein si... 29 4.4
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 29 5.8
At2g41590.1 68415.m05139 expressed protein similar to zinc finge... 29 7.7
>At1g48470.1 68414.m05418 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 353
Score = 359 bits (884), Expect = 1e-99
Identities = 171/308 (55%), Positives = 214/308 (69%), Gaps = 8/308 (2%)
Query: 117 LPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRIS 176
LP WN+DGSST+QA G +S+ L P+AI+KDPFR+GN+ILVMCD Y+ +P +NNR
Sbjct: 50 LPKWNYDGSSTDQAAGDDSEVILYPQAIFKDPFRKGNNILVMCDAYRPAGDPIPTNNRHK 109
Query: 177 CQEAYD--KCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXX-YYCGVGANKVFAR 233
+ +D K +EPWFGIEQEY LL D++ YYC VGA+K F R
Sbjct: 110 AVKIFDHPNVKAEEPWFGIEQEYTLLKKDVKWPLGWPLGGFPGPQGPYYCAVGADKAFGR 169
Query: 234 DLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAEEYG 293
D+V+AHY+ CLY+G+ I G N EVMP QWEFQ+ P++G+ AGD LWVARYIL R+ E G
Sbjct: 170 DIVDAHYKACLYSGLSIGGANGEVMPGQWEFQISPTVGIGAGDQLWVARYILERITEICG 229
Query: 294 VIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYDPRGG 352
VIV+FDPKP+Q DWNG+ AHTNFSTK MR D G+ I++AI KL H +HI Y G
Sbjct: 230 VIVSFDPKPIQGDWNGAAAHTNFSTKSMRKDGGLDLIKEAIKKLEVKHKQHIAAY----G 285
Query: 353 KDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDPYSVID 412
+ NERRLTG HETA IN FS GVA+RG+S+R+ R ++ KGY EDRRP+SN DPY V
Sbjct: 286 EGNERRLTGKHETADINTFSWGVADRGASVRVGRDTEKEGKGYFEDRRPSSNMDPYLVTS 345
Query: 413 ALMRTCIL 420
+ T IL
Sbjct: 346 MIAETTIL 353
Score = 34.3 bits (75), Expect = 0.16
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 46 KILATYIWIDGSGEHLRCKDRTL 68
KI+A YIWI GSG +R K RTL
Sbjct: 18 KIIAEYIWIGGSGMDIRSKARTL 40
>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to
glutamine synthetase, chloroplast precursor (glutamate--
ammonia ligase, GS2) [Arabidopsis thaliana]
SWISS-PROT:Q43127
Length = 430
Score = 355 bits (873), Expect = 3e-98
Identities = 170/315 (53%), Positives = 214/315 (67%), Gaps = 8/315 (2%)
Query: 112 KDQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTES 171
+D +LP WN+DGSST QA G +S+ L P+AI++DPFR GN+ILV+CDT+ EP +
Sbjct: 103 EDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPT 162
Query: 172 NNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXX-YYCGVGAN 228
N R E + K + PWFGIEQEY LL +++ YYCGVGA+
Sbjct: 163 NKRAKAAEIFSNKKVSGEVPWFGIEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGAD 222
Query: 229 KVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRL 288
K++ RD+ +AHY+ CLYAG+ I+GTN EVMP QWEFQVGPS+G+ AGD +W ARY+L R+
Sbjct: 223 KIWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERI 282
Query: 289 AEEYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVY 347
E+ GV++T DPKP++ DWNG+G HTN+STK MR + G I+KAI LS H +HI Y
Sbjct: 283 TEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAY 342
Query: 348 DPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDP 407
G+ NERRLTG HETASI+ FS GVANRG SIR+ R KGYLEDRRPASN DP
Sbjct: 343 ----GEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDP 398
Query: 408 YSVIDALMRTCILNE 422
Y V L T +L E
Sbjct: 399 YIVTSLLAETTLLWE 413
Score = 38.3 bits (85), Expect = 0.010
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 8 KIEDNPKILSGPVLT-NSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDR 66
K + N K+ VL S N+ +++ D +D+I+A YIWI GSG LR K R
Sbjct: 37 KKQSNNKVRGFRVLALQSDNSTVNRVETLLNLDTKPYSDRIIAEYIWIGGSGIDLRSKSR 96
Query: 67 TL 68
T+
Sbjct: 97 TI 98
>At5g37600.1 68418.m04529 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 353 bits (869), Expect = 1e-97
Identities = 169/312 (54%), Positives = 211/312 (67%), Gaps = 8/312 (2%)
Query: 113 DQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESN 172
D LP WN+DGSST QA G +S+ L P+AI+KDPFRRGN+ILVMCD Y EP +N
Sbjct: 46 DPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTN 105
Query: 173 NRISCQEAYDK--CKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXX-YYCGVGANK 229
R + + + + PW+GIEQEY LL D++ YYCG+GA+K
Sbjct: 106 KRHAAAKVFSNPDVAAEVPWYGIEQEYTLLQKDVKWPVGWPIGGYPGPQGPYYCGIGADK 165
Query: 230 VFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLA 289
F RD+V++HY+ CLYAG+ I+G N EVMP QWEFQVGP++G+ A D++WVARYIL R+
Sbjct: 166 SFGRDVVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAADEIWVARYILERIT 225
Query: 290 EEYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYD 348
E GV+V+FDPKP+ DWNG+GAH N+STK MR + G I+KAIDKL H +HI Y
Sbjct: 226 EIAGVVVSFDPKPIPGDWNGAGAHCNYSTKSMREEGGYEIIKKAIDKLGLRHKEHIAAY- 284
Query: 349 PRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDPY 408
G+ NERRLTG HETA IN F GVANRG+SIR+ R ++ KGY EDRRPASN DPY
Sbjct: 285 ---GEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 341
Query: 409 SVIDALMRTCIL 420
V + T IL
Sbjct: 342 IVTSMIAETTIL 353
Score = 36.3 bits (80), Expect = 0.039
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 45 DKILATYIWIDGSGEHLRCKDRTL 68
DKI+A YIW+ GSG +R K RTL
Sbjct: 17 DKIIAEYIWVGGSGMDMRSKARTL 40
>At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 354
Score = 353 bits (868), Expect = 1e-97
Identities = 170/312 (54%), Positives = 210/312 (67%), Gaps = 8/312 (2%)
Query: 113 DQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESN 172
D LP WN+DGSST QA G +S+ L P+AI+KDPFR+GN+ILVMCD Y +P +N
Sbjct: 46 DPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTN 105
Query: 173 NRISCQEAYDK--CKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXX-YYCGVGANK 229
R + + + +EPW+GIEQEY L+ D+ YYCGVGA+K
Sbjct: 106 KRHNAAKIFSHPDVAKEEPWYGIEQEYTLMQKDVNWPIGWPVGGYPGPQGPYYCGVGADK 165
Query: 230 VFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLA 289
RD+V+AHY+ CLYAG+ I+G N EVMP QWEFQVGP G+ +GD +WVARY+L R+
Sbjct: 166 AIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGPVEGISSGDQVWVARYLLERIT 225
Query: 290 EEYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYD 348
E GVIV+FDPKPV DWNG+GAH N+STK MRND G+ I+KAI KL H +HI Y
Sbjct: 226 EISGVIVSFDPKPVPGDWNGAGAHCNYSTKTMRNDGGLEVIKKAIGKLQLKHKEHIAAY- 284
Query: 349 PRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDPY 408
G+ NERRLTG HETA IN FS GVANRG+S+R+ R ++ KGY EDRRPASN DPY
Sbjct: 285 ---GEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPY 341
Query: 409 SVIDALMRTCIL 420
V + T IL
Sbjct: 342 VVTSMIAETTIL 353
Score = 34.3 bits (75), Expect = 0.16
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 46 KILATYIWIDGSGEHLRCKDRTL 68
KI+A YIWI GSG +R K RTL
Sbjct: 18 KIIAEYIWIGGSGMDIRSKARTL 40
>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase) [Alfalfa] SWISS-PROT:P04078
Length = 356
Score = 352 bits (866), Expect = 2e-97
Identities = 167/312 (53%), Positives = 212/312 (67%), Gaps = 8/312 (2%)
Query: 113 DQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESN 172
D LP WN+DGSST QA G +S+ + P+AI+KDPFRRGN+ILVMCD Y EP +N
Sbjct: 46 DPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTN 105
Query: 173 NRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXX-YYCGVGANK 229
R + + ++ +E W+GIEQEY LL D++ YYCGVGA+K
Sbjct: 106 KRHAAAKIFEDPSVVAEETWYGIEQEYTLLQKDIKWPVGWPVGGFPGPQGPYYCGVGADK 165
Query: 230 VFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLA 289
F RD+V++HY+ CLYAG+ ++GTN EVMP QWEFQVGP++G+ A D +WVARYIL R+
Sbjct: 166 AFGRDIVDSHYKACLYAGINVSGTNGEVMPGQWEFQVGPTVGIAAADQVWVARYILERIT 225
Query: 290 EEYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYD 348
E GV+++ DPKP+ DWNG+GAHTN+STK MR D G I+KAI+KL H +HI Y
Sbjct: 226 ELAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAY- 284
Query: 349 PRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDPY 408
G+ NERRLTG HETA IN F GVANRG+SIR+ R + KGY EDRRPASN DPY
Sbjct: 285 ---GEGNERRLTGKHETADINTFLWGVANRGASIRVGRDTEQAGKGYFEDRRPASNMDPY 341
Query: 409 SVIDALMRTCIL 420
+V + + IL
Sbjct: 342 TVTSMIAESTIL 353
Score = 36.3 bits (80), Expect = 0.039
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 39 DLPLPADKILATYIWIDGSGEHLRCKDRTL 68
DL D+I+A YIWI GSG +R K RTL
Sbjct: 11 DLSDSTDQIIAEYIWIGGSGLDMRSKARTL 40
>At1g66200.1 68414.m07514 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 348 bits (856), Expect = 4e-96
Identities = 168/312 (53%), Positives = 209/312 (66%), Gaps = 8/312 (2%)
Query: 113 DQEDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESN 172
D LP WN+DGSST QA G +S+ L P+AI+KDPFRRGN+ILVMCD Y EP +N
Sbjct: 46 DPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTN 105
Query: 173 NRISCQEAYDKCK--DDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXX-YYCGVGANK 229
R + E + + PW+GIEQEY LL D+ YYC +GA+K
Sbjct: 106 KRHAAAEIFANPDVIAEVPWYGIEQEYTLLQKDVNWPLGWPIGGFPGPQGPYYCSIGADK 165
Query: 230 VFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLA 289
F RD+V+AHY+ LYAG+ I+G N EVMP QWEFQVGPS+G+ A D++W+ARYIL R+
Sbjct: 166 SFGRDIVDAHYKASLYAGINISGINGEVMPGQWEFQVGPSVGISAADEIWIARYILERIT 225
Query: 290 EEYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYD 348
E GV+V+FDPKP+ DWNG+GAHTN+STK MR + G I+KAI+KL H +HI Y
Sbjct: 226 EIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREEGGYEIIKKAIEKLGLRHKEHISAY- 284
Query: 349 PRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASNCDPY 408
G+ NERRLTG HETA IN F GVANRG+SIR+ R ++ KGY EDRRPASN DPY
Sbjct: 285 ---GEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 341
Query: 409 SVIDALMRTCIL 420
V + T +L
Sbjct: 342 VVTSMIAETTLL 353
Score = 35.5 bits (78), Expect = 0.067
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 39 DLPLPADKILATYIWIDGSGEHLRCKDRTL 68
D+ ++KI+A YIW+ GSG +R K RTL
Sbjct: 11 DISDNSEKIIAEYIWVGGSGMDMRSKARTL 40
>At3g53180.1 68416.m05860 glutamine synthetase, putative similar to
glutamine synthetase (glutamate--ammonia ligase)
[Bacillus subtilis] SWISS-PROT:P12425
Length = 845
Score = 42.7 bits (96), Expect = 4e-04
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 254 NAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAEEYGVIVTFDPKPVQDWNGSGAHT 313
+AE Q+E +G +I HA D+L R ++ +A + G++ TF PK GSG+H
Sbjct: 590 HAESGKGQFEVSLGHTIASHAADNLVYTREVIRSVARKQGLLATFVPKYDYCDIGSGSHV 649
Query: 314 NFSTKK 319
+ S K
Sbjct: 650 HLSLWK 655
>At4g22880.1 68417.m03304 leucoanthocyanidin dioxygenase, putative /
anthocyanidin synthase, putative similar to SP|P51091
[Malus domestica]; contains PF03171 2OG-Fe(II) oxygenase
superfamily
Length = 356
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 73 KAPKDKLSGILEDYNARAKSNAREWKLKNEVHFLIHYYPKDQEDLPIW 120
K D+ +G ++ Y ++ +NA +L+ E +F YP+++ DL IW
Sbjct: 112 KYANDQATGKIQGYGSKLANNA-SGQLEWEDYFFHLAYPEEKRDLSIW 158
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 31.1 bits (67), Expect = 1.4
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 275 GDDLWVARYILHRLAEEYGVIVTFDPKPVQDWNGSGAHTNFSTKKMRNDNGIIE---IEK 331
GD L VAR + + +P+ D + + +++S N G + + K
Sbjct: 238 GDRLSVARDLDSFEGHGRAIDEVSNPRKFNDNERAESRSSYSRDSSANSRGREDRRFVAK 297
Query: 332 AIDKLSKVHMKHIKVYDPRGGKDNERRLTGLHETASINDFSAGVANRGSSI 382
+D + +VY+PR DNER L G + + S G +R S +
Sbjct: 298 ELDTFQGRDKAYDEVYNPRRFTDNERGLRGGSHSKGSDTNSRGWGDRRSVV 348
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 30.3 bits (65), Expect = 2.5
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 294 VIVTFDPKPVQDWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKV 346
V+ FDPKPV++ N + + K + + + KA +KL HMK+ K+
Sbjct: 291 VMTPFDPKPVEESNFNNLSSTLK-KLFMWEKKLYQEVKAEEKLRTSHMKNYKL 342
>At5g09400.1 68418.m01089 potassium transporter family protein
similar to K+ transporter HAK5 [Arabidopsis thaliana]
GI:7108597; contains Pfam profile PF02705: K+ potassium
transporter; KUP/HAK/KT Transporter family member,
PMID:11500563; Note: possible sequencing error causes a
frameshift in the 4th exon|15810448|gb|AY056263
Length = 858
Score = 29.5 bits (63), Expect = 4.4
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 301 KPVQDWNGSGAHTNFSTKKMRNDNGIIEIEKAIDK-LSKVH 340
KP+ + N S HTN +D+ + E E+++++ LS +H
Sbjct: 754 KPIMEMNTSSDHTNHHPFDTSSDSSVSEAEQSLERELSFIH 794
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 29.1 bits (62), Expect = 5.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 108 HYYPKDQEDLPIWNFDGSSTNQADGHNSDTYLVP 141
H D E +P +N+D SSTN D + YL P
Sbjct: 193 HCEMSDDESMPDFNYDSSSTNATD-EDQHYYLSP 225
>At2g41590.1 68415.m05139 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 367
Score = 28.7 bits (61), Expect = 7.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 36 RYNDLPLPADKILATYIWID-GSGEHLRCKDRTLNF 70
R + PL D+ +A Y +D G +H+RC+ + NF
Sbjct: 263 RISHPPLNHDEFVAAYPHLDSGRNDHIRCEGESSNF 298
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.136 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,827,277
Number of Sequences: 28952
Number of extensions: 486949
Number of successful extensions: 1028
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 19
length of query: 422
length of database: 12,070,560
effective HSP length: 83
effective length of query: 339
effective length of database: 9,667,544
effective search space: 3277297416
effective search space used: 3277297416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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