Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000679-TA|BGIBMGA000679-PA|IPR001202|WW/Rsp5/WWP,
IPR000297|PpiC-type peptidyl-prolyl cis-trans isomerase
(164 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PI... 98 2e-21
At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase PPI... 66 8e-12
At5g19370.1 68418.m02308 rhodanese-like domain-containing protei... 48 3e-06
At2g41020.2 68415.m05066 WW domain-containing protein contains P... 42 2e-04
At2g41020.1 68415.m05067 WW domain-containing protein contains P... 42 2e-04
At3g59770.1 68416.m06670 sacI homology domain-containing protein... 39 0.002
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 37 0.006
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 33 0.13
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 31 0.38
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 31 0.38
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 31 0.38
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 31 0.38
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 31 0.38
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 0.38
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 31 0.51
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 28 3.6
At1g06760.1 68414.m00718 histone H1, putative similar to histone... 27 4.7
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 27 8.3
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 27 8.3
>At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PIN1)
/ cyclophilin / rotamase identical to Chain A, Solution
Structure Of Pin1at From Arabidopsis Thaliana
GI:22218833; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 119
Score = 98.3 bits (234), Expect = 2e-21
Identities = 47/99 (47%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 68 KKSQWEKPGGPA--SXXXXXXXXXXGEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGR 125
+K+ W+ P G + R I+ +A FEE+A+ SDCSSAKR GDLG
Sbjct: 21 RKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGS 80
Query: 126 FKKGQMQKPFEDVAFSLKIGQLSQPVHTDSGIHIILRTA 164
F +GQMQKPFE+ ++LK+G +S V TDSG+HII RTA
Sbjct: 81 FGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119
>At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase
PPIC-type family protein similar to SP|Q9Y237
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
(EC 5.2.1.8) (Rotamase Pin4) (PPIase Pin4) (Parvulin 14)
{Homo sapiens}; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 142
Score = 66.5 bits (155), Expect = 8e-12
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 102 AKFEELASTYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFSLKIGQLSQPVHTDSGIHIIL 161
A+F ++A+ YS+C S K+ GDLG F +G+M PF+DVAF+ +G S P + G HIIL
Sbjct: 77 AEFAKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFNTPVGVTSAPFKSTHGYHIIL 136
>At5g19370.1 68418.m02308 rhodanese-like domain-containing protein /
PPIC-type PPIASE domain-containing protein low
similarity to MPT-synthase sulfurylase [Synechococcus
sp. PCC 7942] GI:2950364; contains Pfam profiles
PF00581: Rhodanese-like domain, PF00639: PPIC-type
PPIASE domain; identical to cDNA peptidyl-prolyl
cis-trans isomerase GI:2246379
Length = 299
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 92 EYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFSLKIGQLSQPV 151
E ++K +D E + +LA+ YS C S K G LG K GQM FE+ AF ++ Q+ +
Sbjct: 113 ELQKKFLDGE-EMSDLAAEYSICPSKKDGGILGWVKLGQMVPEFEEAAFKAELNQVVR-C 170
Query: 152 HTDSGIHII 160
T G+H++
Sbjct: 171 RTQFGLHLL 179
>At2g41020.2 68415.m05066 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 382
Score = 41.9 bits (94), Expect = 2e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 45 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
LP GW K ++G TYY N+HT QWE+P
Sbjct: 194 LPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 30 PAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
P + + +S + E W ++G Y+ N T SQWE P
Sbjct: 224 PVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNTRTHVSQWEPP 269
>At2g41020.1 68415.m05067 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 463
Score = 41.9 bits (94), Expect = 2e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 45 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
LP GW K ++G TYY N+HT QWE+P
Sbjct: 194 LPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 30 PAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
P + + +S + E W ++G Y+ N T SQWE P
Sbjct: 224 PVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNTRTHVSQWEPP 269
>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
WW domain-containing protein contains Pfam profiles
PF00397: WW domain, PF02383: SacI homology domain;
identical to cDNA SAC domain protein 9 (SAC9)
GI:31415734
Length = 1630
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 45 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
LP GWE R TG +YY++ +TK + W P
Sbjct: 510 LPPGWEKRADAVTGKSYYIDHNTKTTTWSHP 540
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar
to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 37.1 bits (82), Expect = 0.006
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 41 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 78
++ LP+ W+ STG+ YY N T +Q+E+P P
Sbjct: 18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAP 55
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 32.7 bits (71), Expect = 0.13
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 58 GMTYYLNKHTKKSQWEKP 75
G Y+ NK TKKS WEKP
Sbjct: 217 GRKYFFNKRTKKSTWEKP 234
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 49 WEARKSRSTGMTYYLNKHTKKSQWEKP 75
W+ S G YY NK TK+S W P
Sbjct: 250 WKEHSSPD-GRKYYYNKITKQSTWTMP 275
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 31.1 bits (67), Expect = 0.38
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 47 EGWEARKSRSTGMTYYLNKHTKKSQWEKPGG 77
+ W A KS + G+ YY N T +S +EKP G
Sbjct: 157 DAWTAHKSEA-GVLYYYNSVTGQSTYEKPPG 186
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 44 ILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
ILP A S + G YY N TK S W+ P
Sbjct: 203 ILPGTDWALVSTNDGKKYYYNNKTKVSSWQIP 234
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 31.1 bits (67), Expect = 0.38
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 45 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
LP W+A ST YY N T ++ W +P
Sbjct: 831 LPSEWQAYWDESTKKVYYGNTSTSQTSWTRP 861
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical
to RNA helicase DRH1 GB:BAA28347 GI:3149952
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 619
Score = 31.1 bits (67), Expect = 0.38
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 41 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical
to RNA helicase DRH1 GB:BAA28347 GI:3149952
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 619
Score = 31.1 bits (67), Expect = 0.38
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 41 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical
to RNA helicase DRH1 GB:BAA28347 GI:3149952
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 618
Score = 31.1 bits (67), Expect = 0.38
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 41 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 31.1 bits (67), Expect = 0.38
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 61 YYLNKHTKKSQWEKP 75
YY NK TK+S WEKP
Sbjct: 213 YYYNKRTKQSNWEKP 227
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar
to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 30.7 bits (66), Expect = 0.51
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 45 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPA 79
LP+ W+ TG Y+ N T +Q+E+P A
Sbjct: 17 LPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSA 51
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 106 ELASTYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFSLKIG-QLSQPVH 152
EL + +D S KR D +K+GQM+ +D L+IG +L VH
Sbjct: 448 ELDARKNDVESVKRAFDSLPYKEGQMEALEKDRESELEIGHRLKDKVH 495
>At1g06760.1 68414.m00718 histone H1, putative similar to histone
H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana];
identical to cDNA H1-1C mRNA for histone H1-1 (partial)
GI:732560
Length = 274
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 22 KRKNLLAFPAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
++K + A P +RT T EE++ + K R+ Y + K ++ + E P
Sbjct: 46 EKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELP 99
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 58 GMTYYLNKHTKKSQWEKP 75
G YY N T +S+WEKP
Sbjct: 605 GFKYYYNGLTGESKWEKP 622
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 58 GMTYYLNKHTKKSQWEKP 75
G YY N T +S+WEKP
Sbjct: 363 GFKYYYNGLTGESKWEKP 380
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.130 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,693,549
Number of Sequences: 28952
Number of extensions: 134278
Number of successful extensions: 270
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 25
length of query: 164
length of database: 12,070,560
effective HSP length: 76
effective length of query: 88
effective length of database: 9,870,208
effective search space: 868578304
effective search space used: 868578304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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