Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000679-TA|BGIBMGA000679-PA|IPR001202|WW/Rsp5/WWP,
IPR000297|PpiC-type peptidyl-prolyl cis-trans isomerase
(164 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 97 5e-21
04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329 63 1e-10
09_04_0095 - 14556508-14556550,14556824-14556966,14557703-145577... 62 3e-10
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 42 2e-04
07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568... 39 0.002
11_03_0142 + 10675764-10675991,10676533-10676943 38 0.005
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 37 0.007
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 35 0.037
12_01_0794 + 7285100-7285369,7285931-7286338 33 0.11
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 33 0.15
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 32 0.20
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 31 0.46
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 28 4.3
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875... 27 7.4
08_02_0375 + 16444836-16445192,16445299-16445398,16445564-16445607 27 7.4
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 27 7.4
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 27 7.4
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 27 9.8
02_05_0399 + 28658667-28658922,28659287-28659443,28659527-286597... 27 9.8
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 27 9.8
01_02_0105 + 11171422-11171667,11171923-11172111 27 9.8
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 97.5 bits (232), Expect = 5e-21
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 48 GWEARKSRSTGMTYYLNKHTKKSQWEKPGGPA--SXXXXXXXXXXGEYRRKIIDREAKFE 105
G +K R++ + +K+ W P G A + R KI+ E KFE
Sbjct: 116 GGGEKKLRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLARALREKIVAGERKFE 175
Query: 106 ELASTYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFSLKIGQLSQPVHTDSGIHIILRTA 164
++A+ SDC+SAKR GDLG F++G+MQK FE +LK+G++S V TDSG+HIILRTA
Sbjct: 176 DVATEESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKVGEISDVVDTDSGVHIILRTA 234
>04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329
Length = 327
Score = 62.9 bits (146), Expect = 1e-10
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 124 GRFKKGQMQKPFEDVAFSLKIGQLSQPVHTDSGIHIILRTA 164
G F + QMQKPFED F+LK+G++S V TDSG+HIILRTA
Sbjct: 287 GTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHIILRTA 327
>09_04_0095 -
14556508-14556550,14556824-14556966,14557703-14557744,
14557940-14558049,14558369-14558519
Length = 162
Score = 61.7 bits (143), Expect = 3e-10
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 107 LASTYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFSLKIGQLSQPVHTDSGIHIIL 161
+A YS+C S K+ GDLG F +G+M PF+DVAFS +G S P + G H IL
Sbjct: 102 IAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTPVGATSAPFKSTHGYHFIL 156
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 45 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
LPE WE +STG YY N +T+ +QWE P
Sbjct: 235 LPENWEEALDQSTGQKYYYNTNTQATQWEPP 265
Score = 41.1 bits (92), Expect = 4e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 45 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 78
LP GW K ++G +Y+ N+ T +QW++PG P
Sbjct: 188 LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAP 221
>07_03_1741 +
29156076-29156316,29156554-29156676,29156784-29156875,
29157577-29157677,29157752-29157862,29158254-29158362,
29158589-29158639,29158758-29158838
Length = 302
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 92 EYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFSLKIGQLSQPV 151
+ + II A +LA YS C S + G LG ++GQM FE+ AF + ++ +
Sbjct: 113 DLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAFGAPLNKVVR-C 171
Query: 152 HTDSGIHII 160
T G H++
Sbjct: 172 KTKFGWHLL 180
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 37.5 bits (83), Expect = 0.005
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 11 SEYNEFSSRDGKRKNLLAFPAQRTNDMASTQEEI---LPEGWEARKSRSTGMTYYLNKHT 67
S ++ SS DG RK F + AS + LP WE +G YYLN+ T
Sbjct: 28 SSESDGSSDDGSRKRRKHFAWEEAVSHASLDLHLNDPLPMDWEQCLDLHSGRMYYLNRKT 87
Query: 68 KKSQWEKP 75
+ W +P
Sbjct: 88 MRKSWVRP 95
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 37.1 bits (82), Expect = 0.007
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 45 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 75
LP GWE R TG ++Y++ +T+ + WE P
Sbjct: 526 LPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 34.7 bits (76), Expect = 0.037
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 12 EYNEFSSRDGKRKNLLAFPAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQ 71
E E ++D K + T+D ASTQ + LP+G+ S N++T+ +
Sbjct: 1413 EAGEKKTKDKKNRETFQKELFMTSDQASTQNQRLPKGYAYVPRDSLSKDKLRNRNTQAHE 1472
Query: 72 WEKPGG 77
++PGG
Sbjct: 1473 PQEPGG 1478
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 11 SEYNEFSSRDGKRKNLLAFPAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKS 70
S ++ SSR ++ P N + + LP WE +G YYLN+ T K
Sbjct: 46 SSESDGSSRKKRKHFTWEEPVSHAN-LELQLNDPLPLDWEQCLDLQSGRMYYLNRKTLKK 104
Query: 71 QWEKP 75
W +P
Sbjct: 105 SWIRP 109
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 49 WEARKSRSTGMTYYLNKHTKKSQWEKP 75
W+ S + G YY NK T++S WEKP
Sbjct: 111 WQEHTS-ADGKKYYYNKKTRQSSWEKP 136
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 11 SEYNEFSSRDGKR----KNLLAFPAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKH 66
S++ E +S DGK+ K ++ ++ + E + G YY NK
Sbjct: 109 SDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGRKYYYNKV 168
Query: 67 TKKSQWEKP 75
TK+S+W P
Sbjct: 169 TKQSKWTIP 177
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 32.3 bits (70), Expect = 0.20
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 45 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 78
LP+ W +TG YY N T +Q+EKP P
Sbjct: 19 LPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPP 52
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 31.1 bits (67), Expect = 0.46
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 45 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 78
LP+ W +TG Y+ N TK Q+++P P
Sbjct: 23 LPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAP 56
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 92 EYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQMQK 133
E+ ++ D E K E L YS C S R L + KKG++ K
Sbjct: 22 EHSSRLADHELK-EMLLKKYSGCLSRLRSEFLKKRKKGKLPK 62
>09_04_0532 +
18386593-18386722,18386826-18386900,18387098-18387510,
18387682-18387688,18387944-18388005,18388046-18388341,
18388456-18388813,18388916-18389491,18389956-18390231
Length = 730
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 32 QRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKK 69
+ TN +A + LP+G R T YY N + KK
Sbjct: 373 KETNYLAQVAAKSLPKGLHCLPLRLTNEYYYTNSNNKK 410
>08_02_0375 + 16444836-16445192,16445299-16445398,16445564-16445607
Length = 166
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 115 SSAKRDGDLGRFKKGQMQKPFE 136
+++ +GDLGR+++GQ+ + FE
Sbjct: 36 ANSTSEGDLGRWRRGQLLQEFE 57
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 91 GEYRRKIIDREAKFEELASTYSDCSSAKRDGD 122
G+YR+K + K ++L+ T S CS+ + D
Sbjct: 152 GQYRKKNLQYRPKEKQLSETASACSAENKSED 183
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 112 SDCSSAKRDGDLGRFKKGQMQKPFEDVAFSLK 143
SDCSS KR + R K + +KP D + + K
Sbjct: 289 SDCSSGKRKRNSSRKKGRKRRKPNSDCSIATK 320
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 3 KTNNCLLVSEYNEFSSRDGKRKNLLAFPAQRTNDMASTQ 41
K+++ + VSEY + D + + F RTNDM STQ
Sbjct: 414 KSDSFVSVSEYQHPLTEDMEVLSPGVFGEHRTNDMISTQ 452
>02_05_0399 +
28658667-28658922,28659287-28659443,28659527-28659746,
28660549-28660602,28660671-28660750,28661269-28661351,
28661385-28661546,28661667-28662071,28662151-28662503,
28662590-28662835,28663158-28663481,28664110-28664154
Length = 794
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 123 LGRFKKGQMQKPFEDVAFSLKIGQLSQPVHTDSGIHII 160
L R KK E L G S+PVHTD IH +
Sbjct: 674 LKRLKKINAHDRQEHKLPELSCGARSEPVHTDDCIHCV 711
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 95 RKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQMQKPFEDV 138
R+IID A + ST S SS KR D + K PF DV
Sbjct: 233 RRIIDSAAPRRSIDSTAS--SSKKRKKDSNKLKHTLSSDPFMDV 274
>01_02_0105 + 11171422-11171667,11171923-11172111
Length = 144
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 92 EYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQMQK 133
E ++ D E K E L YS C S R L + KKG++ K
Sbjct: 22 EQSSRLADHELK-EMLLKKYSGCLSRLRSEFLKKRKKGKLPK 62
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,520,566
Number of Sequences: 37544
Number of extensions: 163398
Number of successful extensions: 311
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 24
length of query: 164
length of database: 14,793,348
effective HSP length: 77
effective length of query: 87
effective length of database: 11,902,460
effective search space: 1035514020
effective search space used: 1035514020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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