GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000679-TA|BGIBMGA000679-PA|IPR001202|WW/Rsp5/WWP,
IPR000297|PpiC-type peptidyl-prolyl cis-trans isomerase
         (164 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   4.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 67  TKKSQWEKPGG 77
           TK SQW K GG
Sbjct: 227 TKLSQWRKDGG 237


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
          protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 23 RKNLLAFPAQRTNDMASTQEEIL 45
          ++++L    QR ND   T+EE++
Sbjct: 48 KQSVLEEARQRANDAGLTEEEVV 70


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,924
Number of Sequences: 429
Number of extensions: 1820
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 164
length of database: 140,377
effective HSP length: 53
effective length of query: 111
effective length of database: 117,640
effective search space: 13058040
effective search space used: 13058040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)