Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000678-TA|BGIBMGA000678-PA|undefined
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    49   1e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    28   2.8  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   6.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   8.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   8.4  

>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 49/209 (23%), Positives = 99/209 (47%), Gaps = 14/209 (6%)

Query: 1   QLASLTAAQNVTEFIDERTLCVTILPKVRIIFE-NNQTDHKVVFLVLAYFERLLPR--LE 57
           Q  S+     + + ID  T+  +I PK+   F   NQ D KV   +L  F   + +  L+
Sbjct: 457 QTTSIQILGTLLDIIDVTTVKSSICPKLYHSFSVTNQLDVKVA--ILDTFNVFINQKFLD 514

Query: 58  RTHLLEHIIPTLLTLKLGDPEIIHRVVKLYRIMLAEKKFALTANVMALKMIPTLAPQMVN 117
              +++ ++P L  +K  +P ++  +V +Y    A     +    +  ++IP L    V+
Sbjct: 515 SFAIVDKLLPVLEKVKTREPTVVMGMVTVYISAGA----IIPEETVHEQVIPRLWILSVS 570

Query: 118 TALTVDQFANLIELLHEIVDAIDKSQRFKLRTEAANPATDRYRSLRHQMSTDNVTAPPFN 177
            +L+++Q+   +  +  + DA+ KS   KL+++ ++   +R  +      T   T+ P +
Sbjct: 571 PSLSLEQYNKCMREIRSLSDAVQKSHAKKLQSKPSSVVPNRITTDPFSSQTKEATSKPSS 630

Query: 178 I-PNLRVEQRKTS----SAEDMARKNSAS 201
           I PN       TS    S++ +AR+ S++
Sbjct: 631 ISPNKATTNIFTSQASLSSQGVARETSSA 659


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/32 (34%), Positives = 22/32 (68%)

Query: 186 RKTSSAEDMARKNSASGPSTSNQTGSISGLKR 217
           +K  +AE++AR+ +A G + +  TG++ G +R
Sbjct: 360 KKKDTAEEIARRMTADGHTVACLTGNLEGAQR 391


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 145 FKLRTEAANPATDRYRSLRHQMST 168
           F+L +E   P  +RYR + H++ST
Sbjct: 59  FQLLSETKIPVPNRYRKISHRLST 82


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 285 SSIGPQERRGSTVNLSPPTGGSVPNTSSSVPFLLASSMNSIKSRRQSGAAA 335
           SS  P     ST+  S  +  S+P+TSSS     +S  +S  S   S +++
Sbjct: 218 SSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSS 268


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 114 QMVNTALTVDQFANLIELLHEIVDAIDKSQRFKLRTEAANPATDRYRSLRHQMSTDN 170
           ++ NT++  + + +++E     +DA  +    K   + +NP  + ++ +RH M+ D+
Sbjct: 526 ELGNTSVASEAYVSILEKHPSFIDARIR----KCLLQLSNPNEETFKEIRHIMNADS 578


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 128 LIELLH-EIVDAIDKSQRFKLRTEAANPATD-RYRSLRHQMSTDN--VTAPPFNIPNLR 182
           L E  H +I DA+D  QR     +  NP    R + LR   +  +  V APP N+PN++
Sbjct: 661 LYESCHNQISDALDAYQR-AAELDPTNPHIKARLQLLRGPNNEQHKIVNAPPSNVPNVQ 718


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,412
Number of Sequences: 5004
Number of extensions: 50885
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 7
length of query: 411
length of database: 2,362,478
effective HSP length: 74
effective length of query: 337
effective length of database: 1,992,182
effective search space: 671365334
effective search space used: 671365334
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)