Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000678-TA|BGIBMGA000678-PA|undefined
         (411 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_42638| Best HMM Match : Filament (HMM E-Value=5.5)                  31   2.3  
SB_58526| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.3  
SB_41228| Best HMM Match : DUF1014 (HMM E-Value=2.9)                   30   3.9  
SB_16951| Best HMM Match : Ribosomal_S20p (HMM E-Value=8.8)            30   3.9  
SB_17150| Best HMM Match : Peptidase_S51 (HMM E-Value=6.6)             30   3.9  
SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                    29   5.2  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_29772| Best HMM Match : HEAT (HMM E-Value=1.54143e-44)              29   6.9  
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)          29   9.1  
SB_25928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.1  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    29   9.1  

>SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1022

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 81  HRVVKLYRIMLAEKKFALTANVMALKMIPTLAPQMVNTALTVDQFANLIELLHEIVDAID 140
           H  V++ +IM  E+K    A     ++IPTL   + +T    D+ A  IE+ +  VD+  
Sbjct: 575 HEYVRVSKIMARERKVLQEAIQSTSQLIPTLNLVLRDTKEMADRVAERIEVTNGQVDSFI 634

Query: 141 KSQ 143
           + Q
Sbjct: 635 EQQ 637


>SB_42638| Best HMM Match : Filament (HMM E-Value=5.5)
          Length = 252

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 153 NPATDRYRSLRHQMST-DNVTAPPFNIPNLRVEQRKTSSAEDMARKNSASGPSTSNQTGS 211
           N  T+ Y S  H   T   ++A PF+I   +VE++ T+   D  + N  SG +T   T  
Sbjct: 4   NWKTNLYASGPHAKGTASRISAKPFDINLRKVERKITALPTD--KSNLLSGKNTKEAT-R 60

Query: 212 ISGLKRLGQ 220
              LK LGQ
Sbjct: 61  FFNLKSLGQ 69


>SB_58526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 153 NPATDRYRSLRHQMST-DNVTAPPFNIPNLRVEQRKTSSAEDMARKNSASGPSTSNQTGS 211
           N  T+ Y S  H   T   ++A PF+I   +VE++ T+   D  + N  SG +T   T  
Sbjct: 4   NWKTNLYASGPHAKGTASRISAKPFDINLRKVERKITALPTD--KSNLLSGKNTKEAT-R 60

Query: 212 ISGLKRLGQ 220
              LK LGQ
Sbjct: 61  FFNLKSLGQ 69


>SB_41228| Best HMM Match : DUF1014 (HMM E-Value=2.9)
          Length = 308

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 140 DKSQRFKLRTEAANPATDRYRSLRHQMSTDNVTAPPFNIPNLRVEQRKTSSAEDMARKNS 199
           ++  R K+R   A PA  + +  + +  +   T  P      R++ R+      + +K +
Sbjct: 14  NRKYRNKIRANPAKPAAYKAKDRQRKCESRKKTLSPLEAGRQRIKGRERVRLHQLLKKQA 73

Query: 200 ASGPSTSNQ 208
           A G ST  Q
Sbjct: 74  AKGISTPVQ 82


>SB_16951| Best HMM Match : Ribosomal_S20p (HMM E-Value=8.8)
          Length = 128

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 140 DKSQRFKLRTEAANPATDRYRSLRHQMSTDNVTAPPFNIPNLRVEQRKTSSAEDMARKNS 199
           ++  R K+R   A PA  + +  + +  +   T  P      R++ R+      + +K +
Sbjct: 14  NRKYRNKIRANPAKPAAYKAKDRQRKCESRKKTLSPLEAGRQRIKGRERVRLHQLLKKQA 73

Query: 200 ASGPSTSNQ 208
           A G ST  Q
Sbjct: 74  AKGISTPVQ 82


>SB_17150| Best HMM Match : Peptidase_S51 (HMM E-Value=6.6)
          Length = 152

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 140 DKSQRFKLRTEAANPATDRYRSLRHQMSTDNVTAPPFNIPNLRVEQRKTSSAEDMARKNS 199
           ++  R K+R   A PA  + +  + +  +   T  P      R++ R+      + +K +
Sbjct: 14  NRKYRNKIRANPAKPAAYKAKDRQRKCESRKKTLSPLEAGRQRIKGRERVRLHQLLKKQA 73

Query: 200 ASGPSTSNQ 208
           A G ST  Q
Sbjct: 74  AKGISTPVQ 82


>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 131 LLHEIVDAIDKSQRFKLRTEAANPATDRYRSLRHQMSTDNVTAPPFNIPNLRVEQRKTSS 190
           L H+  +   K   F    E      D   + R Q   D++   PF IP   +EQ +   
Sbjct: 55  LSHQKQETKKKHDVFTTLQETLEVLRDDAETSRDQFKRDDMWCRPFEIPEHPIEQLELKK 114

Query: 191 AE--------DMARKNSASGPSTSNQTGSISGLKRLG 219
            E         + R NS SGP  + +    S    LG
Sbjct: 115 EEINLERQHSKIMRGNSVSGPQLAGERSPSSTESLLG 151


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 283 RHSSIGPQERRGSTVNLSPPTGGSVPNTSSSVPFLLASSMNSIKSRRQSGAA 334
           + +S GPQ +  ST NL+ P G S P+T +  PF  A S +   S+    +A
Sbjct: 760 QQASAGPQSQPPSTFNLA-PFGVSAPSTQA--PFTSAGSFSFAPSQHAFSSA 808


>SB_29772| Best HMM Match : HEAT (HMM E-Value=1.54143e-44)
          Length = 405

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 8   AQNVTEFIDERTLCVTILPKVR-IIFENNQTDHKVVFLVLAYFERLLPRLERTHLLEHII 66
           +++++  I E  L   ILP V+ ++ + NQ     +  V+     L P L + + +EH++
Sbjct: 219 SESLSSDIRESVLMTNILPCVKELVIDPNQHVKSALASVIM---GLSPLLGKDNTIEHLL 275

Query: 67  PTLLT-LKLGDPEI 79
           P  LT LK   PE+
Sbjct: 276 PLFLTMLKDEFPEV 289


>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
          Length = 769

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 99  TANVMALKMIPTLAPQMVNT----ALTVDQFANLIELLHEIVDAIDKSQRFKLRTEAANP 154
           T+++M+  M P L+ + ++T     L  +   NL + + E++   D+S    +R   +N 
Sbjct: 513 TSSLMSSTMAPELSTERLSTPEHSTLMPENTPNLSKPITEMLTKPDESTGSTVRLSMSNK 572

Query: 155 ATDRYRSLRHQMSTDN 170
             + +++  H++ TD+
Sbjct: 573 HKEAHKTETHELPTDS 588


>SB_25928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 15 IDERTLCVTIL---PKVRIIFENNQTDHKVV 42
          I ER  C T+L   PK RI  E+N  DH+ V
Sbjct: 61 ISERICCTTLLQGYPKTRINGEDNNQDHRPV 91


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 133 HEIVDAIDKSQRFKLRTEAANPATDRYRSLRHQMSTDNVTAPPFNIPNLRVEQRKTS 189
           HE +  + +  R  L+ E A+P +++  SL HQ     V+  P N  N   + R  S
Sbjct: 813 HEPLHDVSRPIRSILKNEPASPPSNKPESLYHQADARPVSPEPENQYNHYYQTRPVS 869


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,106
Number of Sequences: 59808
Number of extensions: 339206
Number of successful extensions: 973
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 12
length of query: 411
length of database: 16,821,457
effective HSP length: 84
effective length of query: 327
effective length of database: 11,797,585
effective search space: 3857810295
effective search space used: 3857810295
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)