Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000678-TA|BGIBMGA000678-PA|undefined
         (411 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06210.2 68415.m00683 phosphoprotein-related low similarity t...    30   3.2  
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t...    30   3.2  
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR...    29   7.5  
At3g01370.1 68416.m00059 expressed protein contains Pfam domain,...    29   7.5  
At1g79620.1 68414.m09283 leucine-rich repeat transmembrane prote...    29   7.5  
At1g22870.1 68414.m02855 protein kinase family protein contains ...    29   7.5  

>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
           phosphoprotein from Mus musculus GI:1236239; contains
           Pfam profile PF00515 TPR Domain
          Length = 852

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 98  LTANVMALKMIPTLAPQMVNTALTVD-QFANLIELLHEIVDAIDKSQRFKLRTEAANPAT 156
           L A+  A   +P LA ++VN AL VD +  N + LL E+    D   + K    AAN AT
Sbjct: 325 LAASAKAQNNLP-LAIELVNEALKVDDKNPNALSLLGELELKNDDWVKAKETFRAANDAT 383

Query: 157 D 157
           D
Sbjct: 384 D 384


>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
           phosphoprotein from Mus musculus GI:1236239; contains
           Pfam profile PF00515 TPR Domain
          Length = 1064

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 98  LTANVMALKMIPTLAPQMVNTALTVD-QFANLIELLHEIVDAIDKSQRFKLRTEAANPAT 156
           L A+  A   +P LA ++VN AL VD +  N + LL E+    D   + K    AAN AT
Sbjct: 537 LAASAKAQNNLP-LAIELVNEALKVDDKNPNALSLLGELELKNDDWVKAKETFRAANDAT 595

Query: 157 D 157
           D
Sbjct: 596 D 596


>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1261

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 23  TILPKVRIIFENNQTDHKVVFLVLAYFER 51
           TI   +RI ++  +  HK+VFL +AYF R
Sbjct: 446 TIQDVLRIPYDELKEQHKIVFLDIAYFFR 474


>At3g01370.1 68416.m00059 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 1011

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 174 PPFNIPNLRVEQRKTSSAEDMARKNSASGPSTSNQT 209
           PPF +PN  V +R  S A      +SASG  T  Q+
Sbjct: 23  PPFLVPNTLVSRRNVSRANSGIFCSSASGRKTLPQS 58


>At1g79620.1 68414.m09283 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GI:1389566 from [Arabidopsis thaliana]
          Length = 971

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 73  KLGDPEIIHRVVKLYRIMLAEKKFALTANVMALKMIPTLAPQMVNT 118
           +L DP IIHR VK   I+L E   A  A+    K++       V+T
Sbjct: 752 ELADPPIIHRDVKSTNILLDENLTAKVADFGLSKLVSDCTKGHVST 797


>At1g22870.1 68414.m02855 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 913

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 11  VTEFIDERTLCVTILPKVRIIFENNQTDHKVVFLVLAYFERLLPRLERTHLLEHIIPTLL 70
           + E  D+    +T LP +  +      D   + L++   E ++ +    HL+ H++P LL
Sbjct: 413 IAESQDKNDFELTTLPALVPVLSTATGD--TLLLLIKRAELIINKTNAEHLVSHVLPLLL 470

Query: 71  TLKLGDPEIIHRVVKLYRIMLAEKKFALTANVMALKMIPTLAPQMVNTALTVDQFANLIE 130
                D ++  +   L R     K+  L   V+   ++P +    + T +   +  N + 
Sbjct: 471 R-AYNDNDVRIQEEVLKRSTSVAKQ--LDGQVVRQAILPRVHGLALKTTVAAVR-VNALL 526

Query: 131 LLHEIVDAIDK 141
            L E+V  +DK
Sbjct: 527 CLAELVQTLDK 537


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,314,431
Number of Sequences: 28952
Number of extensions: 242923
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 6
length of query: 411
length of database: 12,070,560
effective HSP length: 83
effective length of query: 328
effective length of database: 9,667,544
effective search space: 3170954432
effective search space used: 3170954432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)