GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000678-TA|BGIBMGA000678-PA|undefined
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1111 - 26157796-26160330                                         32   0.96 
12_02_1149 - 26467252-26468319,26468452-26469147,26469263-264694...    30   2.9  
09_06_0179 + 21380018-21380346,21380468-21380595,21380710-213808...    30   3.9  
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365...    29   9.0  
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686     29   9.0  

>12_02_1111 - 26157796-26160330
          Length = 844

 Score = 31.9 bits (69), Expect = 0.96
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 20  LCVTILPKVRIIFENN--QTDHKVVFLVLAYFERLLPRLERTHLLEHII 66
           +C  ILP VRI   N+    D + +   L  +ERLLP +    +LEH+I
Sbjct: 484 VCEVILPAVRISGTNSWEARDPEPMLRFLESWERLLPPIVLQSILEHVI 532


>12_02_1149 -
           26467252-26468319,26468452-26469147,26469263-26469409,
           26470936-26471274
          Length = 749

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 284 HSSIGPQERRGSTVNLSPPTGGSVPNTSSSVPFLLASSMNSIK 326
           H S    +R   T  LSP +G SVP++   V  ++ + + ++K
Sbjct: 174 HQSPDASQRSAVTAPLSPSSGDSVPSSKDEVSSVIKAGLRNLK 216


>09_06_0179 +
           21380018-21380346,21380468-21380595,21380710-21380853,
           21380938-21381086,21381226-21381361,21381583-21381679,
           21382056-21382156,21382354-21382466,21382865-21382936,
           21382970-21383161,21383249-21383344,21383463-21383615
          Length = 569

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 166 MSTDNVTAPPFNIPNLRVEQRKTSSAEDMARKNSASGPSTSNQTGSISGLKRL 218
           +S  N+ +  FNIP L +    +  AED+AR +S    S  N +    G KRL
Sbjct: 164 VSVFNIISKLFNIPLLSITT--SFVAEDVARHDSDQFTSEGNMSSESGGRKRL 214


>11_01_0471 -
           3648871-3649078,3649841-3649926,3650111-3650155,
           3650306-3650815,3651700-3653757
          Length = 968

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query: 13  EFIDERTLCV-TILPKVRIIFEN--NQTDHKVVFLVLAYFERLLPRLERTHLLEHIIPTL 69
           E +D+R +    +LP++ +I +N  N   H   + +     R L RL    LLE +IP++
Sbjct: 79  EIVDKRDVASGKVLPEMILICQNLRNNLQHPNEY-IRGVTLRFLCRLNEPELLEPLIPSI 137

Query: 70  LTLKLGDPEIIHRVVKLYRIMLAEKKFALTANVMALKMIPTLAPQMVNTALTVDQFAN 127
               L + +  H  ++ + +      + L       +++P  AP++V  ALT +Q A+
Sbjct: 138 ----LANLDHRHHFIRRHALSAISAIYRLPHGD---QLLPD-APEVVERALTGEQDAS 187


>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
          Length = 959

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 172 TAPPFNIPNLRVEQRKTSSAEDMARKNSASGPSTSNQ 208
           T+ P +  ++ VEQR  S A+D+ + ++A   +TS +
Sbjct: 549 TSEPLDGDSVEVEQRSPSKADDLGQNDNAGFENTSGE 585


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,086,028
Number of Sequences: 37544
Number of extensions: 301485
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 5
length of query: 411
length of database: 14,793,348
effective HSP length: 84
effective length of query: 327
effective length of database: 11,639,652
effective search space: 3806166204
effective search space used: 3806166204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)