GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000678-TA|BGIBMGA000678-PA|undefined
         (411 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.89 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.4 bits (53), Expect = 0.89
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 177 NIPNLRVEQRKTSSAEDMARKNSASGPSTSNQTGSISGL 215
           NIP++++++ +  S E +   NS S P    +  +++ L
Sbjct: 391 NIPSVKIDEDQKCSIESITSVNSTSSPKPFPRRATLAQL 429


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 282 RRHSSIGPQERRGSTVNLSPPTGGSVPNTSSSVPFLLASSMNSIKSRRQSGAAA 335
           ++H+S  P          S  T  +   TSS  P++ A++ +    ++Q+ AAA
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAAA 110


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 108 IPTLAPQMVNTALTVDQFANLIELLHEIVDAIDK 141
           +  L  +  N +  +DQ + LI+ L  ++  +D+
Sbjct: 348 VVALEAEKKNLSKVIDQHSQLIDTLENVLAIVDR 381


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,508
Number of Sequences: 429
Number of extensions: 3205
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 411
length of database: 140,377
effective HSP length: 59
effective length of query: 352
effective length of database: 115,066
effective search space: 40503232
effective search space used: 40503232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)