GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000677-TA|BGIBMGA000677-PA|undefined
         (144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    30   0.16 
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    29   0.28 
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   0.85 

>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 6   DSALDPMEEIRFRKKHGSMWMEIQKDTHFTFDELEKIMVIFFKIQKRDEKPAASDLISRS 65
           +  L+P++   F K +      + K T  T   ++ I     KI +  E  A  DL+ + 
Sbjct: 126 EGPLNPLQASYFAKVNEHF---LDKKTEETVAFIQSIDNFVEKILRHAETSAIMDLLLKF 182

Query: 66  HFRDVLHTGLGMTDSYMMERVMVALDRGTSPYV 98
              D  +T +G+ D    + ++ +L R  SPYV
Sbjct: 183 ISMDRCNTAIGIADWLYSQGLIQSLLRLLSPYV 215


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 27  EIQKDTHFTFDELEKIMVIFFKIQKRDEKPAASDLISRSHFRDVLHTGLGMTD-SYMMER 85
           ++ + T F   EL++    FFK          S  +++S F+ +        D S   E 
Sbjct: 15  DLVRSTRFDKKELQQWYKGFFK-------DCPSGHLNKSEFQKIYKQFFPFGDPSAFAEY 67

Query: 86  VMVALDRGTSPYVTMATFAKAISLYLRGDIEERIAYAF 123
           V    D   + Y+    F  A+S+  RG++ +++ +AF
Sbjct: 68  VFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAF 105


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 15  IRFRKKHGSMWMEIQKDTHFTFDELEKIMVIFFKIQKRDEKP 56
           +R  K HGS   +IQ    +  D +  +  I+  ++ ++E P
Sbjct: 536 LRIAKPHGSFLGKIQAANKYGSDNIANVRDIYVPLEMKEENP 577


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,433
Number of Sequences: 5004
Number of extensions: 19486
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 3
length of query: 144
length of database: 2,362,478
effective HSP length: 67
effective length of query: 77
effective length of database: 2,027,210
effective search space: 156095170
effective search space used: 156095170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)