GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000677-TA|BGIBMGA000677-PA|undefined
         (144 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    33   0.068
11_06_0267 + 21795762-21796190                                         29   1.9  
12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976           27   5.9  
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493...    27   5.9  
06_01_0182 + 1413551-1413794,1413883-1414139,1414241-1414387,141...    27   5.9  
11_06_0270 + 21803292-21803672                                         27   7.9  
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969...    27   7.9  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 33.5 bits (73), Expect = 0.068
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 2    STSLDSALDPMEEIRF-RKKHGSMWMEIQK----DTHFTFD--ELEKIMVIFFKIQKRDE 54
            +T+  S L P+  ++  R  HGS+W EIQK    ++H  FD  ELE +  I  K +   +
Sbjct: 1250 ATARRSTLKPLHWVKVTRAMHGSLWAEIQKQADANSHSEFDVKELESLFAIAPKTKGGSK 1309

Query: 55   KPAAS 59
               AS
Sbjct: 1310 SDGAS 1314


>11_06_0267 + 21795762-21796190
          Length = 142

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 9  LDPMEEIRFRKKHGSMWMEIQKDTHFTFDELEK 41
          LD MEE  + + +G MW+  +K    TF ++++
Sbjct: 42 LDDMEEFGYNRANGFMWIVHRKKKEHTFKKIKQ 74


>12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976
          Length = 414

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 65  SHFRDVLHTGLGMTDSYMMERVMVALDRGTSP 96
           SH++ VL      T+SY+ E++  AL+ G+ P
Sbjct: 295 SHYKFVLAIENTKTESYVTEKLFYALEAGSVP 326


>06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,
            4938003-4938059,4938145-4938300,4938402-4938486,
            4938727-4938817,4938896-4939060,4939150-4939345,
            4939593-4939731,4940187-4941874,4942575-4942765,
            4942850-4942994
          Length = 1055

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 19   KKHGSMWMEIQKDTHFTFDELEKIMVIFFKIQKRDEKPAASD--LISRSHFRDVLHTG 74
            +K GS+   I    +  +DEL   +   F IQ + E P   D  L+   H  D+L  G
Sbjct: 946  QKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVG 1003


>06_01_0182 +
           1413551-1413794,1413883-1414139,1414241-1414387,
           1414487-1414804
          Length = 321

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 11  PMEEIRFRKKHGSMWMEIQKDTHFTFDELEKIMVIFFKIQKRDEKPAASD 60
           P+  IR + KH  +  EI  ++  +F EL+K++     +   D+K    D
Sbjct: 56  PVPTIRVKVKHAGITHEIYINSQASFGELKKMVAARTGLHPDDQKVMYKD 105


>11_06_0270 + 21803292-21803672
          Length = 126

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 9  LDPMEEIRFRKKHGSMWMEIQKDTHFTFDELEK 41
          LD +EE  + + +G MW+  +K    TF ++++
Sbjct: 26 LDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQ 58


>09_04_0497 -
           18096299-18096496,18096586-18096675,18096809-18096914,
           18097005-18097179,18097263-18097365,18097458-18097712,
           18097791-18097868,18097986-18098078,18098179-18098319,
           18098406-18098510,18098658-18098738,18098825-18098866,
           18098966-18099082,18099208-18099351,18099485-18099568,
           18099683-18099803,18099863-18099988,18100106-18100179,
           18100388-18100657
          Length = 800

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 48  KIQKRDEKPAASDLISRSH-FRDVLHTGLGMTDSYMMERVMVALDRGTSPYV 98
           +I+ + +  A +  I+RSH F     TG+GMT   + + +      GTS ++
Sbjct: 142 EIRIKPDPEAGTITITRSHCFASYSDTGIGMTKDELKDCLGTIAQSGTSKFL 193


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,483
Number of Sequences: 37544
Number of extensions: 113069
Number of successful extensions: 359
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 7
length of query: 144
length of database: 14,793,348
effective HSP length: 75
effective length of query: 69
effective length of database: 11,977,548
effective search space: 826450812
effective search space used: 826450812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)