GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000677-TA|BGIBMGA000677-PA|undefined
         (144 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.21 
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          29   1.1  
SB_30266| Best HMM Match : Fzo_mitofusin (HMM E-Value=1.2)             29   1.1  
SB_17672| Best HMM Match : ERM (HMM E-Value=0.13)                      29   2.0  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  28   3.4  
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  

>SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 26  MEIQKDTHFTFDELEKIMVIFFKIQKRDEKPAASDLISRSHFRDVLHTGLGMTD-SYMME 84
           +E++K T FT DEL+K    F     ++  P     +S+S F ++        D S    
Sbjct: 17  LELRKTTEFTEDELQKWFAAF-----KNNCPKGK--MSQSKFCEMYAKSYKTGDASIFAG 69

Query: 85  RVMVALDRGTSPYVTMATFAKAISLYLRGDIEERIAYAFTV 125
            V    D+     +    F + +S+  RG  E ++ +AF +
Sbjct: 70  HVFRTFDKNNDGTIDFNEFIQGLSIISRGSKETKLRWAFEI 110


>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 19  KKHGSMWMEIQKDTHFTFDELEKIMVIFFKIQKRDEKPAASDLISRSHFRDVLHTGLGMT 78
           K+   +W + QK+    FD+++K  +   +  K   +     L  R   +D  ++     
Sbjct: 154 KRLDRLWSKKQKEKEAKFDKIQKEHIKKMRKLKEKRRTVEGKLERRDVVQD--YSDFNSQ 211

Query: 79  DSYMMERVMVALDRGTSPY 97
               M RV V LDRG+  Y
Sbjct: 212 TYAPMSRVGVFLDRGSEQY 230


>SB_30266| Best HMM Match : Fzo_mitofusin (HMM E-Value=1.2)
          Length = 1052

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 53  DEKPAASDLISRSHFRDVLHTGLGMTDSYMMERVMVALDRGTSPYVTMATFA 104
           D +   S+++  SH R  L+  L  TDSYM ++     D      +T+ T A
Sbjct: 470 DAELEGSEMVDLSHSRKRLNRKLNTTDSYMPQQAYDEADASMESSLTLPTDA 521


>SB_17672| Best HMM Match : ERM (HMM E-Value=0.13)
          Length = 391

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 4  SLDSALDPMEEIRFRKKHGSMWMEIQKD----THFTFDELEKIMVIFFKIQKRDEKPAAS 59
          S+ S   P+   ++ +KH  M  +I+KD       T  ELE++  ++ + Q++ E   A 
Sbjct: 16 SVSSIATPLSGSQYDEKHKVMLKKIEKDRKDSQEKTQGELERVSEMYSRAQQKHEAAKAR 75

Query: 60 DLISRSHFRDV 70
          + +  +  + V
Sbjct: 76 NTVLSNELKSV 86


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 53  DEKPAASDLISRSHFRDVLHTGLGMTDS 80
           D K ++S  +  SHF +VLH G G+  S
Sbjct: 371 DVKESSSHALFDSHFSEVLHAGSGIAPS 398


>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1177

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6   DSALDPMEEIRFRKKHGSMWMEIQKDTHFTFDELEKIMVIFFKIQKRDE 54
           D  LDP E++   ++   +W E+Q++      + EKI  +  ++ +R++
Sbjct: 88  DLPLDPKEDVT-PEELNKLWNELQREKVHLHSQREKIQSMLERVYQREQ 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,899,727
Number of Sequences: 59808
Number of extensions: 128612
Number of successful extensions: 267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 7
length of query: 144
length of database: 16,821,457
effective HSP length: 76
effective length of query: 68
effective length of database: 12,276,049
effective search space: 834771332
effective search space used: 834771332
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)