Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000676-TA|BGIBMGA000676-PA|undefined
         (59 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    20   1.7  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    20   2.2  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    19   3.9  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock
          protein 70 protein.
          Length = 195

 Score = 20.2 bits (40), Expect = 1.7
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 28 IISPSGDINWAPRSCDLTPLDYFL 51
          +++ SGD +      D   +DYF+
Sbjct: 46 VVATSGDTHLGGEDFDQKVMDYFI 69


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
          protein protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 2.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 9  TCYTAGETLNLLDEKFE 25
          TC T    +NL+ E+F+
Sbjct: 25 TCETLMSDINLIKEEFD 41


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 17  LNLLDEKFEGFI 28
           L   DEKFE F+
Sbjct: 343 LQCQDEKFESFV 354


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,959
Number of Sequences: 317
Number of extensions: 622
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 59
length of database: 114,650
effective HSP length: 39
effective length of query: 20
effective length of database: 102,287
effective search space:  2045740
effective search space used:  2045740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)