Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000676-TA|BGIBMGA000676-PA|undefined
         (59 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           75   8e-15
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)             69   6e-13
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   6e-13
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   6e-13
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                  67   2e-12
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                 66   5e-12
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)                   60   3e-10
SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)                      26   5.1  

>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 2   WFQQDGATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLTPLDYFLWGYVK 56
           WFQQDGAT +TA ET+  L ++FEG +IS   D+ WAP S DL P D++LWG++K
Sbjct: 659 WFQQDGATPHTANETIAWLRQRFEGRLISRRCDVEWAPHSPDLNPPDFYLWGFLK 713


>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
          Length = 615

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 2   WFQQDGATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLTPLDYFLWGYVK 56
           WFQQDGAT +TA  T+  L ++FE  +IS   D+ WAP S DL P D++LWG++K
Sbjct: 274 WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLK 328


>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 2   WFQQDGATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLTPLDYFLWGYVK 56
           WFQQDGAT +TA  T+  L ++FE  +IS   D+ WAP S DL P D++LWG++K
Sbjct: 50  WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLK 104


>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 2   WFQQDGATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLTPLDYFLWGYVK 56
           WFQQDGAT +TA  T+  L ++FE  +IS   D+ WAP S DL P D++LWG++K
Sbjct: 50  WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLK 104


>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 153

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 2   WFQQDGATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLTPLDYFLWGYVK 56
           WFQQDGAT +TA  T+  L ++FE  +IS   D+ W P S DL P D++LWG++K
Sbjct: 50  WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWVPHSPDLNPPDFYLWGFLK 104


>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 254

 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 2   WFQQDGATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLTPLDYFLWGYVK 56
           WFQQDGAT +TA  T+  L ++FE  +IS   D+ WA  S DL P D++LWG++K
Sbjct: 50  WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAQHSPDLNPPDFYLWGFLK 104


>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
          Length = 267

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query: 5  QDGATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLTPLDYFLWGYVK 56
          QDGAT +TA  T+  L ++FE  +IS   D+ WAP S DL P D++LWG++K
Sbjct: 1  QDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLWGFLK 52


>SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)
          Length = 628

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 7   GATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLTPLD 48
           GA CY    T NL  E+  G +I P     +      L+PL+
Sbjct: 179 GALCYPQDVTQNLHSERHLGRVIGPFDSSPFRSHHLILSPLN 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,691
Number of Sequences: 59808
Number of extensions: 74804
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 8
length of query: 59
length of database: 16,821,457
effective HSP length: 38
effective length of query: 21
effective length of database: 14,548,753
effective search space: 305523813
effective search space used: 305523813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)