Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000676-TA|BGIBMGA000676-PA|undefined
         (59 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72140.1 68414.m08341 proton-dependent oligopeptide transport...    26   2.7  
At2g23960.1 68415.m02861 defense-related protein, putative simil...    26   3.6  
At1g34550.1 68414.m04294 expressed protein contains Pfam profile...    25   4.8  
At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide...    25   6.4  
At1g03010.1 68414.m00273 phototropic-responsive NPH3 family prot...    25   6.4  
At1g61095.1 68414.m06881 expressed protein                             25   8.4  
At1g22540.1 68414.m02815 proton-dependent oligopeptide transport...    25   8.4  

>At1g72140.1 68414.m08341 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 555

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 30  SPSGDINWAPRSCDLTPLDYFLW 52
           S SG ++W   + +   LDYF W
Sbjct: 507 SQSGQVSWFSNNLNQAHLDYFYW 529


>At2g23960.1 68415.m02861 defense-related protein, putative
          similar to defense-related protein [Brassica carinata]
          GI:14009290
          Length = 251

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 5/28 (17%)

Query: 22 EKFEGFIISPSG-----DINWAPRSCDL 44
          EK+EGF+IS S      D +W  + CD+
Sbjct: 58 EKYEGFVISGSSHDAFQDTDWILKLCDI 85


>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616);
           expression supported by MPSS
          Length = 812

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 8   ATCYTAGETLNLLDEKFEGFIISPSGD 34
           A CY +G T N  D+K  GF+ S  GD
Sbjct: 170 AYCYISGFTYNSYDDK--GFVDSYEGD 194


>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
           identical to phage-type RNA polymerase rpoT2
           [Arabidopsis thaliana] GI:11340683
          Length = 1011

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 7   GATCYTAGETLNLLDEKFE 25
           GA CY A  TL  +DE F+
Sbjct: 824 GAACYAAKVTLAAIDEMFQ 842


>At1g03010.1 68414.m00273 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 634

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 20  LDEKFEGFIISPSGDINWAPRSCDLTPLDYF 50
           LD  F G  I P   ++W  +S  +  LD+F
Sbjct: 189 LDYSFSGTNIEPQTPLDWWGKSLAVLNLDFF 219


>At1g61095.1 68414.m06881 expressed protein
          Length = 125

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 10 CYTAGETLNLLDEKFEGFI 28
          CYT  ET+N + +KF  ++
Sbjct: 42 CYTENETVNHIVQKFPSYV 60


>At1g22540.1 68414.m02815 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 557

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 30  SPSGDINWAPRSCDLTPLDYFLW 52
           S SG  +W   + +   LDYF W
Sbjct: 507 SQSGQASWFANNLNQAHLDYFYW 529


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,825
Number of Sequences: 28952
Number of extensions: 55213
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 7
length of query: 59
length of database: 12,070,560
effective HSP length: 39
effective length of query: 20
effective length of database: 10,941,432
effective search space: 218828640
effective search space used: 218828640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)