GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000676-TA|BGIBMGA000676-PA|undefined
         (59 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    23   3.6  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    23   4.8  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    23   4.8  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    23   4.8  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    23   6.4  

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 25  EGFIISPSGDINWAPRS---CDLTPLDYFLWGYVKSQP 59
           EG+ IS SG   W P S     +  L +++ GY+   P
Sbjct: 673 EGYAISTSGFSLWNPSSKSWVSMEKLGFYMSGYLFDIP 710


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 11  YTAGETLNLLDEKFEGFI 28
           YTAG+ +  LD K  GFI
Sbjct: 164 YTAGDHIRKLDFKDSGFI 181


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 330

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 15 ETLNLLDEKFEGFIISPSGDIN 36
          E  ++L E + GF+  PSG  N
Sbjct: 46 EPSSMLSEGYYGFVSQPSGSSN 67


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 7/34 (20%)

Query: 6   DGATCYTAGETLNL-------LDEKFEGFIISPS 32
           +G  C+T+GE L L       L  K  GF + PS
Sbjct: 132 EGRKCWTSGELLRLNGSEPPVLCAKASGFFVEPS 165


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 288

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 20 LDEKFEGFIISPSGDINWAP 39
          + +KF G +I+P+G +  +P
Sbjct: 58 IGQKFRGVVITPNGKVPVSP 77


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 309,132
Number of Sequences: 5004
Number of extensions: 10017
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 59
length of database: 2,362,478
effective HSP length: 40
effective length of query: 19
effective length of database: 2,162,318
effective search space: 41084042
effective search space used: 41084042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)