GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000676-TA|BGIBMGA000676-PA|undefined
         (59 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0051 - 741031-741820,742998-743530,743616-743833,743941-74...    27   1.5  
01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970           26   3.3  
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76...    25   7.7  
10_01_0052 - 750902-751697,753077-753603,753696-753913,754012-75...    25   7.7  

>10_01_0051 -
           741031-741820,742998-743530,743616-743833,743941-744043,
           744239-744318,744719-744725
          Length = 576

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 11  YTAGETLNLLDEKFEGFIISPS---GDINWAPRSCDLTPLDYFLW 52
           + A  T N L+    G +++ +   G   W P + D   LDYF W
Sbjct: 509 HLAVATANYLNSGVLGVVVAATTRGGGAGWIPDNLDEGHLDYFFW 553


>01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970
          Length = 580

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 9   TCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLTPLDYFLW 52
           T    G  L+ L       + + +G + W P + +   LDYF W
Sbjct: 498 TTVALGNYLSTLLVTIVTHVTTRNGAVGWIPDNLNRGHLDYFFW 541


>10_01_0053 -
           767131-767962,768517-769037,769384-769601,769720-769825,
           769958-770017
          Length = 578

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 33  GDINWAPRSCDLTPLDYFLW 52
           GD  W P   +   LDYF W
Sbjct: 532 GDPGWIPDDLNKGHLDYFFW 551


>10_01_0052 -
           750902-751697,753077-753603,753696-753913,754012-754114,
           754337-754393
          Length = 566

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 33  GDINWAPRSCDLTPLDYFLW 52
           G   W P + D   LDYF W
Sbjct: 518 GGAGWIPDNLDEGHLDYFFW 537


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,083
Number of Sequences: 37544
Number of extensions: 67304
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 4
length of query: 59
length of database: 14,793,348
effective HSP length: 39
effective length of query: 20
effective length of database: 13,329,132
effective search space: 266582640
effective search space used: 266582640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)