GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000676-TA|BGIBMGA000676-PA|undefined
         (59 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    35   0.006
U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr...    27   1.2  
U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical pr...    27   1.2  
Z74030-10|CAA98439.1|  317|Caenorhabditis elegans Hypothetical p...    26   2.7  
AF100657-4|AAK70655.2|  261|Caenorhabditis elegans Hypothetical ...    25   4.8  
U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 3   FQQDGATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLTPLDYFLWGYVKSQ 58
           FQQDGA  +         +  F  FI        W P S DL P+DY +W  ++++
Sbjct: 307 FQQDGAPAHKHKNVQAWCESNFPDFIAFNQ----WPPSSPDLNPMDYSVWSVLEAK 358


>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical
           protein T05C1.4b protein.
          Length = 1163

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 1   MWFQQDGATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLT 45
           M++QQ  A+C  + ++ N++D+ F+        DI   PRS + T
Sbjct: 837 MFYQQ--ASCSMSTDSPNMMDDYFDMMATETRNDIFTEPRSTETT 879


>U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical
           protein T05C1.4a protein.
          Length = 1185

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 1   MWFQQDGATCYTAGETLNLLDEKFEGFIISPSGDINWAPRSCDLT 45
           M++QQ  A+C  + ++ N++D+ F+        DI   PRS + T
Sbjct: 837 MFYQQ--ASCSMSTDSPNMMDDYFDMMATETRNDIFTEPRSTETT 879


>Z74030-10|CAA98439.1|  317|Caenorhabditis elegans Hypothetical
           protein D1054.11 protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 12  TAGETL--NLLDEKFEGFIISPSGDINWAPRSCDLTPL 47
           TAG TL  N  D ++EGF+I  +   N   +  ++T L
Sbjct: 130 TAGVTLVCNRDDRRYEGFVIDMNATTNGFSKKIEITQL 167


>AF100657-4|AAK70655.2|  261|Caenorhabditis elegans Hypothetical
           protein F52C12.2 protein.
          Length = 261

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 20  LDEKFEGFIISPSGDINWAPR 40
           L ++F G ++SP+G    APR
Sbjct: 92  LGQRFPGLVLSPTGTYTLAPR 112


>U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.5 protein.
          Length = 308

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)

Query: 40  RSCDLTPLDYFLWGYVKSQP 59
           R+ D TP+D++ WG  K QP
Sbjct: 256 RNSDGTPVDFYKWG--KKQP 273


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,673
Number of Sequences: 27539
Number of extensions: 55751
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 6
length of query: 59
length of database: 12,573,161
effective HSP length: 40
effective length of query: 19
effective length of database: 11,471,601
effective search space: 217960419
effective search space used: 217960419
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)