GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000676-TA|BGIBMGA000676-PA|undefined
         (59 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   0.51 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   1.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   1.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   1.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   1.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   1.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        19   3.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   4.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   4.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   4.7  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 0.51
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 39  PRSCDLTPLDYFLW 52
           P S DL P DYFL+
Sbjct: 271 PYSPDLAPSDYFLF 284


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 28  IISPSGDINWAP 39
           +I P+GD+ W P
Sbjct: 132 LIYPNGDVLWVP 143


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 10  CYTAGETL-NLLDEKFEGFIISPSGD 34
           C T  +T+  + DEK EG I+  + D
Sbjct: 195 CNTNSDTMVYIADEKGEGLIVYHNSD 220


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 10  CYTAGETL-NLLDEKFEGFIISPSGD 34
           C T  +T+  + DEK EG I+  + D
Sbjct: 195 CNTNSDTMVYIADEKGEGLIVYHNSD 220


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 1   MWFQQDGATCYTAGETLNL 19
           MW+   G  C  AG+ +++
Sbjct: 284 MWYSPFGIMCLIAGKIMSI 302


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 10  CYTAGETL-NLLDEKFEGFIISPSGD 34
           C T  +T+  + DEK EG I+  + D
Sbjct: 195 CNTNSDTMVYIADEKGEGLIVYHNSD 220


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 44 LTPLDYFLWGYVKSQP 59
          L P++  L G+V+S P
Sbjct: 19 LAPINALLLGFVQSTP 34


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 31  PSGDINWAPRSCD 43
           PSG  NW P + D
Sbjct: 336 PSGIPNWVPGNHD 348


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 18  NLLD-EKFEGFIISPSGDINWAPRSCD 43
           N LD EK+EG   +PS   + +   CD
Sbjct: 306 NDLDLEKYEGISSTPSQASSCSCLDCD 332


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 31  PSGDINWAPRSCD 43
           PSG  NW P + D
Sbjct: 336 PSGIPNWVPGNHD 348


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,716
Number of Sequences: 429
Number of extensions: 613
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 59
length of database: 140,377
effective HSP length: 39
effective length of query: 20
effective length of database: 123,646
effective search space:  2472920
effective search space used:  2472920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)