Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000675-TA|BGIBMGA000675-PA|IPR004837|Sodium/calcium
exchanger membrane region, IPR004481|K+-dependent Na+/Ca+ exchanger
related-protein
         (422 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.76 
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   5.4  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   5.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   7.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   9.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 65  FLLYVVFGIYTFTLLAIVCNDYF-IPCVELIC 95
           +  Y  F I+T  LL ++C  YF +P   L+C
Sbjct: 114 YYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLC 145



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 65  FLLYVVFGIYTFTLLAIVCNDYFIPCVELIC 95
           +  Y  F ++T  LL +VC  YF     L C
Sbjct: 239 YYFYYAFILFTVHLLLLVCIYYFYYMHLLFC 269


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 389 VGIVLGILYVVFIVFAILVELGII 412
           V ++L IL  VF+ +  + E+G++
Sbjct: 141 VYVILYILATVFLAYVWICEMGVV 164


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 389 VGIVLGILYVVFIVFAILVELGII 412
           V ++L IL  VF+ +  + E+G++
Sbjct: 141 VYVILYILATVFLAYVWICEMGVV 164


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 24  WLRTRIEVVDNVAHEVVCATGDSIDSFP 51
           WL  +  V+D   +E++   G+   SFP
Sbjct: 184 WLNEQRAVIDFDNNEILLRNGEKHHSFP 211


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 253  GFNDPSPVTNGTTMTEKPAIDEKNGHTFFIPESV-MGMTFLAFGGC 297
            G  DPS   N  T  EKP +            S+ + ++  + GGC
Sbjct: 1474 GTGDPSDTLNPRTRGEKPIVPSAEKFIEVSSNSITLHLSAWSDGGC 1519


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.142    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,517
Number of Sequences: 317
Number of extensions: 4023
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 8
length of query: 422
length of database: 114,650
effective HSP length: 59
effective length of query: 363
effective length of database: 95,947
effective search space: 34828761
effective search space used: 34828761
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)