Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000675-TA|BGIBMGA000675-PA|IPR004837|Sodium/calcium
exchanger membrane region, IPR004481|K+-dependent Na+/Ca+ exchanger
related-protein
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 60 8e-10
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 42 2e-04
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 32 0.13
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 29 1.6
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 28 2.1
SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 5.0
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 5.0
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 6.6
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 26 8.7
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 59.7 bits (138), Expect = 8e-10
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Query: 56 TDEQLRQGAFLLYVVFGIYTFTLLAIVCNDYFIPCVELICEDLKIPQNVAAATFMSVATS 115
T LR + V + I+ F + I +D+F + I L++P +V TF+++
Sbjct: 103 TINSLRFPVLSIIVGWLIFLFITIGISASDFFSTNLVTISWLLQLPDSVVGVTFLALGNG 162
Query: 116 CPEFFVNVISTFLTESDMGIGTIVGSALFNXXXXXXXXXXXXXTPIAIDMRPVTRDVLIY 175
P+ + + M IG ++GSA F P I R RDV
Sbjct: 163 SPDILSTFAAVRVNSGGMAIGELLGSAFF--IVAIVAGSVCLIKPFKIPRRHFLRDVAFL 220
Query: 176 MVNISVLVAFV-WDGQIDWFEAMVLGILYILYFVVMFNS 213
I +++ FV DG + ++++V+ + Y+LY + +F S
Sbjct: 221 TGTILLVIMFVLHDGSLSIWQSLVMILYYLLYVLFVFFS 259
Score = 45.2 bits (102), Expect = 2e-05
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 277 GHTFFIPESVMGMTFLAFGGCLPEACSIFIMSRRGEGGIGVSNALGANSLAILFALGLPW 336
G F + ES++G+T A G L + + +++R G + + G +L IL +G+
Sbjct: 611 GVIFNLNESILGLTVFAAGNSLSDLIADIMIARSGFPEMAMGGVFGGPTLNILIGIGISS 670
Query: 337 LIRTVSLEIQGAENTAVLINSAGIDFXXXXXXXXXXXXWIVLFIGKFTLRRTVGIVLGIL 396
++S N +V+ + I + + +F + R +G++L IL
Sbjct: 671 FYSSIS----NHGNDSVIEIPHSLSITAYFLLACLLLLLIYVPLNRFRVNRVLGLLLFIL 726
Query: 397 YVVFIVFAILVEL 409
Y+V I+VEL
Sbjct: 727 YIVGTSTNIVVEL 739
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 282 IPESVMGMTFLAFGGCLPEACSIFIMSRRGEGGIGVSNALGANSLAILFALGLPWLIR 339
+P+SV+G+TFLA G P+ S F R GG+ + LG+ + G LI+
Sbjct: 147 LPDSVVGVTFLALGNGSPDILSTFAAVRVNSGGMAIGELLGSAFFIVAIVAGSVCLIK 204
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/139 (18%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Query: 77 TLLAIVCNDYFIPCVELICEDLKIPQNVAAATFMSVATSCPEFFVNVISTFLTESDMGIG 136
T+ +C DY + ++ + E++ I + + V + E ++ ++ + D+ +G
Sbjct: 273 TVFVSLCADYLVGSIDQLVEEVNISKTFVGLVILPVVGNAAEHVTAIVVSYRGQMDLALG 332
Query: 137 TIVGS----ALFNXXXXXXXXXXXXXTPIAIDMRPVTRDVLIYMVNISVLVAFVWDGQID 192
+GS ALF P+ + + + +I V++ ++ + DG
Sbjct: 333 VAIGSSIQIALF-LAPFLVIVGWIISQPLTLYFESL--ETVILFVSVFLVNYLIQDGATH 389
Query: 193 WFEAMVLGILYILYFVVMF 211
W E + L LY + + F
Sbjct: 390 WLEGVQLLALYAIVVLAFF 408
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 32.3 bits (70), Expect = 0.13
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 229 KKNNGVTASLNDNNVSVEEGIDNK----GFNDPSPVTNGTTMTEKP--AIDEKNGHTFFI 282
K++ G A ++ N+V +E+ N GF + S + N ++ TEKP A+D +N + F
Sbjct: 264 KEDFGEEADIS-NSVFIEQNGPNSDTVSGFKETSSIVNSSSTTEKPGVALDSQNDTSIFN 322
Query: 283 PESVMGMT 290
E +T
Sbjct: 323 EEQTNSLT 330
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 28.7 bits (61), Expect = 1.6
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 180 SVLVAFVWDGQIDWFEAMVLGILYILYF 207
S+ + F+W QI W+ ++ ++ +YF
Sbjct: 454 SIEIVFIWYAQILWYLVFIVSVILSIYF 481
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 378 LFIGKFTLRRTVGIVLGILYVVF 400
LF+ LR+ +G++LG+L+ VF
Sbjct: 387 LFLTYLDLRQAIGLILGVLHTVF 409
>SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 229 KKNNGVTASLNDNNVSVEEGIDNKGFNDPSPVTNGTTMTEKPAI 272
KKN SLN+N E K F + P GT + PA+
Sbjct: 62 KKNISKDKSLNENLFGKTEAGKQKDFMNIEPTCKGTILGAPPAL 105
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 236 ASLNDNNVSVEEGIDNKGFNDPSPVTNGTTMTEKPAIDEKNGHTFF 281
A ++ N+ + D NDPSP++ G I +TFF
Sbjct: 24 ALVHQNHSTPNHASDELSVNDPSPLSRGLQSDVNSNISRNISNTFF 69
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.6 bits (56), Expect = 6.6
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 234 VTASLNDNNVSVEEGIDNKGFNDPSPVTNGTTMTEKPAIDEKNGHTFFIPESVMGMTFLA 293
V + +N NN +VE + N PS T E+P + + P + +
Sbjct: 14 VESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVA--T 71
Query: 294 FGGCLPEACSIFI 306
G P + S+++
Sbjct: 72 PSGTAPTSASLYV 84
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 230 KNNGVTASLNDNNVSVEEGIDNKGFNDPSPVTNGTTMTEKPAIDEKNGH 278
+ N A + N+ E KGFN+ + TNGTT AI GH
Sbjct: 5 RTNVNVAIVGTGNIGGELLNQIKGFNENAS-TNGTTSFNVVAISSMEGH 52
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.326 0.142 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,185
Number of Sequences: 5004
Number of extensions: 71746
Number of successful extensions: 236
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 12
length of query: 422
length of database: 2,362,478
effective HSP length: 75
effective length of query: 347
effective length of database: 1,987,178
effective search space: 689550766
effective search space used: 689550766
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -