Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000675-TA|BGIBMGA000675-PA|IPR004837|Sodium/calcium
exchanger membrane region, IPR004481|K+-dependent Na+/Ca+ exchanger
related-protein
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0564 - 4176177-4178096 54 3e-07
03_05_0545 + 25419031-25420758 53 4e-07
11_01_0292 - 2200714-2201478,2202691-2203395 41 0.002
12_02_1175 + 26702744-26704507 39 0.009
10_08_0133 + 15100049-15101836,15103344-15103382 36 0.061
11_06_0626 - 25620409-25620706,25620814-25620943,25621034-256212... 36 0.081
09_04_0380 - 17117134-17118093 31 1.7
04_03_0735 + 19141038-19143227 30 3.0
>03_01_0564 - 4176177-4178096
Length = 639
Score = 53.6 bits (123), Expect = 3e-07
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 3/177 (1%)
Query: 41 CATGDSIDSFPDGIFTDEQLRQGAFLLYVVFGIYTFTLLAIVCNDYFIPCVELICEDLKI 100
C++G +D E+ R + + V F +L DYF +E + L++
Sbjct: 107 CSSGGFVDYLGFFYCRCERFRVLGYAVLGVCLAALFYMLGNTAADYFCCSLEKMSALLRL 166
Query: 101 PQNVAAATFMSVATSCPEFFVNVISTFLT-ESDMGIGTIVGSALF-NXXXXXXXXXXXXX 158
P VA T + P+ F ++ + T D+G+ +++G A+F
Sbjct: 167 PPTVAGVTLLPFGNGAPDVFASIAAFMGTGAGDVGLNSVLGGAVFVTCVVVGAVSLCVAE 226
Query: 159 TPIAIDMRPVTRDVLIYMVNISVLVAFVWDGQIDWFEAMVLGILYILY-FVVMFNSM 214
+ ID R RDV +++ + L + G++ + A++ +Y++Y FVV N +
Sbjct: 227 KNVQIDRRCFVRDVGFFLMTLVALSIILIVGKVTVWGAIMFVSIYVVYAFVVAANEV 283
Score = 34.7 bits (76), Expect = 0.14
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 6/133 (4%)
Query: 282 IPESVMGMTFLAFGGCLPEACSIFIMSRRGEGG--IGVSNALGANSLAILFALGLPWLIR 339
I S++G+T LA+G + + S ++ G G I +S L LG+ L+
Sbjct: 505 INPSILGLTVLAWGNSMGDLMSNVALAMNGGDGVQIAMSGCYAGPMFNTLAGLGISMLLG 564
Query: 340 TVSLEIQGAENTAVLINSAGIDFXXXXXXXXXXXXWIVLFIGKFTLRRTVGIVLGILYVV 399
S A N+ VL + + + ++L G + +G+ L LY V
Sbjct: 565 AWST----APNSYVLPQDSSLIYTMSFLVGGLIWALVMLPRGGMQPNKILGVGLIALYSV 620
Query: 400 FIVFAILVELGII 412
F+ + +GI+
Sbjct: 621 FLFIRVSNAMGIL 633
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 274 EKNGHTFFIPESVMGMTFLAFGGCLPEA-CSIFIMSRRGEGGIGVSNALG 322
EK +P +V G+T L FG P+ SI G G +G+++ LG
Sbjct: 158 EKMSALLRLPPTVAGVTLLPFGNGAPDVFASIAAFMGTGAGDVGLNSVLG 207
>03_05_0545 + 25419031-25420758
Length = 575
Score = 53.2 bits (122), Expect = 4e-07
Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 76 FTLLAIVCNDYFIPCVELICEDLKIPQNVAAATFMSVATSCPEFFVNVISTFLTE-SDMG 134
F LL ++YF +E + +L++P +A T +S+ P+ F +V+S + +G
Sbjct: 128 FYLLGDTASEYFCASLEGLSAELRLPPAIAGVTLLSLGNGAPDVFASVVSFAAGDGGGVG 187
Query: 135 IGTIVGSALFNXXXXXXXXXXXXXT-----PIAIDMRPVTRDVLIYMVNISVLVAFVWDG 189
+ + +G ALF + + +++R RD+ ++ + L+A + G
Sbjct: 188 LNSALGGALFVSTVVAGVVALAAASRAGRGGVVVELRGFVRDICFLLLALCSLLAILVTG 247
Query: 190 QID-WFEAMVLGILYILYFVVMFNS 213
+ W A + LY+ Y ++++ S
Sbjct: 248 TVTVWVSASFVS-LYVAYVLLVWTS 271
Score = 31.5 bits (68), Expect = 1.3
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 282 IPESVMGMTFLAFGGCLPEACSIFIMSRRGE-GGIGVSNALG 322
+P ++ G+T L+ G P+ + + G+ GG+G+++ALG
Sbjct: 152 LPPAIAGVTLLSLGNGAPDVFASVVSFAAGDGGGVGLNSALG 193
Score = 30.7 bits (66), Expect = 2.3
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 277 GHTFFIPESVMGMTFLAFGGCLPEACSIFIMSRRGEGGIGVSNALGANSLAILF--ALGL 334
G+ + SV+G+T LA+G L + S M+ G G G A+ LF +GL
Sbjct: 434 GYMVGVRASVLGVTVLAWGDSLGDLVSNVAMALHGGAG-GAQTAVSGCYAGPLFNTVVGL 492
Query: 335 PWLIRTVSLEIQGAENTAVLINSAGIDFXXXXXXXXXXXXWIVLFIGKFTLR--RTVGIV 392
L T++ G++ A AG W +L + +R R G+
Sbjct: 493 -GLSLTLA---AGSQYPAPFAIPAGGAVYEAVGFLGAGLAWALLVVPARGMRLDRVYGMG 548
Query: 393 LGILYVVFIVFAILVELGI 411
L +Y+ F+ + LG+
Sbjct: 549 LIAIYLAFVTIRVFDSLGL 567
>11_01_0292 - 2200714-2201478,2202691-2203395
Length = 489
Score = 40.7 bits (91), Expect = 0.002
Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 4/174 (2%)
Query: 76 FTLLAIVCNDYFIPCVELICEDLKIPQNVAAATFMSVATSCPEFFVNVISTFLTES--DM 133
F +LA +F P V + L++ ++AA T +++ P+ F + +
Sbjct: 50 FRVLAAAAGTHFSPAVSRLAARLRLSPSMAAVTLLALGNGAPDAFASAAALGGAGGMRRA 109
Query: 134 GIGTIVGSALFNXXXXXXXXXXXXXTPIAIDMRPVTRDVLIYMVNISVLVAFVWDGQIDW 193
G+ I+ + F P A+ RDV Y++ S L +I
Sbjct: 110 GLAAILSAGAF-VSAFVVGAVALIAAPFAVPPASFARDVFFYLLAASGLFYIYLSAEIYL 168
Query: 194 FEAMVLGILYILYFVVMFNSMKAFVLIDKIWAACCKKNNGVTASLNDNNVSVEE 247
++A+ L +L+ ++FV + M + + NG+ + D V+VE+
Sbjct: 169 WQAIGL-VLFYVFFVGLVVYMDLDAEGKAVSTTELEVVNGIGRVVMDLPVTVED 221
Score = 34.7 bits (76), Expect = 0.14
Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 283 PESVMGMTFLAFGGCLPEACSIFIMSRRGEGGIGVSNALGANSLAILFALGLPWLIRTVS 342
P +++GMT LA+G + + + +++ G+ I ++ +L LG +I+T
Sbjct: 364 PPAILGMTVLAWGNSVGDLVADVALAKSGQPTIAIAGCFAGPMFNMLVGLGTALVIQTAR 423
Query: 343 LEIQGAENTAVLINSAGIDFXXXXXXXXXXXXWIVLFIGKFTLRRTVGIVLGILYVVFIV 402
+ VL GI +++ +F + R G L LY++F V
Sbjct: 424 V----YPKAYVLEFHVGIVVAFVFLLLSLMGTLLMVTWTRFRVPRFWGYCLMGLYILFTV 479
Query: 403 FAILV 407
+I +
Sbjct: 480 VSIAI 484
>12_02_1175 + 26702744-26704507
Length = 587
Score = 38.7 bits (86), Expect = 0.009
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 18/156 (11%)
Query: 76 FTLLAIVCNDYFIPCVELICEDLKIPQNVAAATFMSVATSCPEFFVNVISTFL------- 128
F LL + YF +E + L++P +A T +S+ P+ +V++
Sbjct: 122 FYLLGDTASAYFCASLEGLSAVLRLPPAIAGVTLLSLGNGAPDVLSSVVAFAAGARGGDG 181
Query: 129 ------TESDMGIGTIVGSALFNXXXXXXXXXXXX-----XTPIAIDMRPVTRDVLIYMV 177
D+G+ ++G ALF P+ I+ R RDV +V
Sbjct: 182 GGGGGEDAGDVGLSGVLGGALFVSTVVAGVVAIVAGRRGGGEPVIIERRGFVRDVCFLLV 241
Query: 178 NISVLVAFVWDGQIDWFEAMVLGILYILYFVVMFNS 213
+ L+A + G + + A LY Y ++++ S
Sbjct: 242 ALCYLLAVLLTGAVTVWSAASFLSLYAGYVLLVWTS 277
Score = 34.3 bits (75), Expect = 0.19
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 282 IPESVMGMTFLAFGGCLPE-ACSIFIMSRRGEGGIGVSNALGANSLAILF--ALGLPWLI 338
+ V+G T LA+G L + + + +RRG+GG G A+ A F +GL L
Sbjct: 453 VEAGVLGATVLAWGNSLGDLVADVALATRRGDGGAGAQTAVAGCYAAPAFNTVVGL-GLS 511
Query: 339 RTVSLEIQGAENTAVLINSAGIDFXXXXXXXXXXXXWIVLFIGKFTLR--RTVGIVLGIL 396
TV+ GA + G W V + +R +G+ L ++
Sbjct: 512 LTVA---AGARHPEAYAVEGGAAVYVAVGFLAAALVWAVAVLPARGMRLDAVLGVGLLVI 568
Query: 397 YVVFIVFAILV 407
Y VF+ ++ +
Sbjct: 569 YFVFLCVSLAI 579
>10_08_0133 + 15100049-15101836,15103344-15103382
Length = 608
Score = 35.9 bits (79), Expect = 0.061
Identities = 32/166 (19%), Positives = 71/166 (42%), Gaps = 9/166 (5%)
Query: 52 DGIFTDEQLRQGAFLLYVVFGIYTFTLLAIVCNDYFIPCVELICEDLKIPQNVAAATFMS 111
D +F +E+ G ++ + F LL YF +E + L++ +A T +S
Sbjct: 107 DCVFGEERRVLGYAVMAAWLAVL-FYLLGDTAAVYFCSSLEGLSRLLRLSPAIAGVTLLS 165
Query: 112 VATSCPEFFVNVISTFLT------ESDMGIGTIVGSA-LFNXXXXXXXXXXXXXTPIAID 164
+ P+ ++ I++F + + +G+ ++GSA L + +A+D
Sbjct: 166 LGNGAPDA-LSTIASFASGGGEGETTAVGLNGVLGSAMLVSSAVLGVIGVRLGARGVAVD 224
Query: 165 MRPVTRDVLIYMVNISVLVAFVWDGQIDWFEAMVLGILYILYFVVM 210
RD + ++ + + G++ + A+ LY++Y V +
Sbjct: 225 RVDFYRDASFLLAALAAVAVVLAAGEVTIWGALAFTSLYVVYVVAV 270
Score = 34.3 bits (75), Expect = 0.19
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 267 TEKPAIDEKNGHTFFIPESVMGMTFLAFGGCLPEACSIFIMSRRGEGG----IGVSNALG 322
TE A+ H + + +G+T LA+G L + + ++ RG GG + V+ G
Sbjct: 452 TELLALLVSAAHVMGVDSAALGLTVLAWGNSLGDLVANLAVASRGGGGGGAQVAVAGCYG 511
Query: 323 ANSLAILFALGLPWLIRTVSLEIQGAENTAVLINSAGIDFXXXXXXXXXXXXWIVLFIGK 382
+L LG+ L+ + A + + A W V+ + +
Sbjct: 512 GPVFDVLVGLGVSMLLSS------WASHPRPVAMPAEAGPFQTLGFAAAGICWAVVVMSR 565
Query: 383 FTLR--RTVGIVLGILYVVFIVFAILVELG 410
+R RT+G L +Y+ F+ I LG
Sbjct: 566 RGMRVDRTLGFGLLAIYLCFLCINISQALG 595
Score = 32.7 bits (71), Expect = 0.57
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 285 SVMGMTFLAFGGCLPEACSIFIMSRRGEGGIGVSNALGANSLAILFALGLPWLIRTVSLE 344
++ G+T L+ G P+A S I S GG G + A+G N + LG L+ + L
Sbjct: 157 AIAGVTLLSLGNGAPDALST-IASFASGGGEGETTAVGLNGV-----LGSAMLVSSAVLG 210
Query: 345 IQGAENTAVLINSAGIDF--XXXXXXXXXXXXWIVLFIGKFTLRRTVGIV-LGILYVVFI 401
+ G A + +DF +VL G+ T+ + L ++YVV +
Sbjct: 211 VIGVRLGARGVAVDRVDFYRDASFLLAALAAVAVVLAAGEVTIWGALAFTSLYVVYVVAV 270
Query: 402 VF 403
F
Sbjct: 271 AF 272
>11_06_0626 -
25620409-25620706,25620814-25620943,25621034-25621250,
25621894-25622015,25622119-25622267,25622642-25622759,
25622840-25623185
Length = 459
Score = 35.5 bits (78), Expect = 0.081
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 286 VMGMTFLAFGGCLPEACSIFIMSRRG-EGGIGVSNALGANSLAILFALGLPWLIRTVSLE 344
V+ T LA G P+ + I + R ++N +NS+ I +G+PWL+ T+
Sbjct: 323 VIAFTALAAGTSWPDLVASKIAAERQITADSAITNITCSNSVNIYVGIGVPWLVDTM-YN 381
Query: 345 IQGAENTAVLINSAGIDFXXXXXXXXXXXXWIVLFIGKFTLRRTVG----------IVLG 394
+ + N+AG+ F VL + + L +G +
Sbjct: 382 YFVYQKPLYIDNAAGLSFSLLVFFATSFGCITVLVLRRVILGAELGGPRMWAWATSVYFM 441
Query: 395 ILYVVFIVFAILVELGII 412
IL+VVF+V + L G+I
Sbjct: 442 ILWVVFVVLSSLKISGVI 459
>09_04_0380 - 17117134-17118093
Length = 319
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 187 WDGQIDWFEAMVLGILYILYFVVMFNSMKAFVLIDKIWA 225
W G++DWFE+ G +FV + S KA L+D++ A
Sbjct: 279 WGGEVDWFESEGEG---HAFFVRKYGSSKAVKLMDRVIA 314
>04_03_0735 + 19141038-19143227
Length = 729
Score = 30.3 bits (65), Expect = 3.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 239 NDNNVSVEEGIDNKGFNDPSPVTNGTTMTEKPAIDEKNGHTFFIPESV 286
+DNN+ G+ +K ++ + T+ P +DEKN +P S+
Sbjct: 440 SDNNIKQNGGLSDKHVKGLKQCSSRSVDTQAPTVDEKNPEQRRVPVSI 487
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.142 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,888,723
Number of Sequences: 37544
Number of extensions: 435886
Number of successful extensions: 1128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 18
length of query: 422
length of database: 14,793,348
effective HSP length: 84
effective length of query: 338
effective length of database: 11,639,652
effective search space: 3934202376
effective search space used: 3934202376
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)
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