Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000674-TA|BGIBMGA000674-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (317 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47729| Best HMM Match : ASC (HMM E-Value=1.8e-07)                   40   0.003
SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)               34   0.13 
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)                    33   0.23 
SB_35036| Best HMM Match : ASC (HMM E-Value=7.8e-12)                   33   0.41 
SB_36224| Best HMM Match : ASC (HMM E-Value=1.9e-38)                   31   0.94 
SB_45690| Best HMM Match : Homeobox (HMM E-Value=4.6e-31)              31   1.2  
SB_16156| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_56324| Best HMM Match : ASC (HMM E-Value=1.3e-14)                   30   2.9  
SB_27752| Best HMM Match : ASC (HMM E-Value=3.7e-07)                   29   5.0  
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       29   6.6  
SB_48042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_48770| Best HMM Match : Peptidase_C1 (HMM E-Value=1.9e-14)          28   8.7  
SB_42377| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_5051| Best HMM Match : DUF1193 (HMM E-Value=0.88)                   28   8.7  

>SB_47729| Best HMM Match : ASC (HMM E-Value=1.8e-07)
          Length = 387

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 26  RVASCGYQTALTVLIKTDPLDYYSA-SVASQGVLVFIDDSYNLPDLDSPVRMVNPSSEVF 84
           +  + G +T+L++ +  +  +YY   S  + G  + + D   +P++D     ++P     
Sbjct: 265 QATTSGTRTSLSLRLNAESDEYYGPFSYDATGFKLAVHDQNEIPNMDEDAFDISPGFLTN 324

Query: 85  IALSPERTYSTPGVKGFPPEQRQCYFKDEVKIANFRQYSFHNCIVYRKLKSIKDACNC 142
           I +  E+  + P      P + +C  +D   ++N  +YS   CI     K I D C C
Sbjct: 325 IRIRREKEINLPS-----PYRSECGSRD---LSNAPKYSMSGCIYECYSKIIADKCKC 374


>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
          Length = 464

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 159 TTLVDDL-HCLPECEHFDYPLEVALGKLASNMHLNRLPFFNEVDLVNQSVLNVFFNDLVS 217
           T++  DL +C P CE   +  E++     +     R+    E    N + + + +  +  
Sbjct: 344 TSVNPDLCNCRPPCETTSFQYELSTSAFPAPNSFLRINMSLETQRENLAAVQISYVGMQY 403

Query: 218 TRYRRDVYLNWQNILAAFGGLLSLMLG---FTLISGFDLVIFLV 258
                   L+ +++    GG+L LMLG    T++  F+LV +L+
Sbjct: 404 EHLEEVPVLSVESLFGEVGGILGLMLGCSILTVVEVFELVWWLI 447


>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 672

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 216 VSTRYRRDVYLNWQNILAAFGGLLSLML---GFTLISGFDLVIFLV----LHVFYGLIQI 268
           +  R+ RD+YL  +NI  AF   L  +L   G   +  +   +FL+    L V Y  IQ 
Sbjct: 200 IVNRFARDMYLVDENIPRAFNFFLRTLLSVFGTVFVISYSTPLFLIVLVPLAVLYAFIQR 259

Query: 269 IFVYKNKYVQKINVQERN 286
           +FV  ++ ++++    R+
Sbjct: 260 LFVSTSRQLKRLESVSRS 277


>SB_35036| Best HMM Match : ASC (HMM E-Value=7.8e-12)
          Length = 420

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 22  PLPRR-VASCGYQTALTVLIKTDPLDYYSASVASQGVLVFIDDSYNLPDLDSPVRMVNPS 80
           P PR+ V   G    LTVL+ T  +D  +   +S+GV   + +      +D  V ++ P 
Sbjct: 126 PAPRKQVTFSGVDFGLTVLLNTR-VDENTIGTSSEGVRAVVHEPGEYFSVDHGVNVM-PG 183

Query: 81  SEVFIALSPERTYSTPGVKGFPPEQRQCYFKDEVKIANFRQYSFHNCIVYRKLKSIKDAC 140
           +   I +  ++T + P      P +  C    E K    R YS   C+     + +   C
Sbjct: 184 AHAAILVHAQKTTTLP-----LPYKSNC---TESK-PGLRLYSMEGCVALCASQELTRRC 234

Query: 141 NCAP 144
            C P
Sbjct: 235 GCRP 238


>SB_36224| Best HMM Match : ASC (HMM E-Value=1.9e-38)
          Length = 451

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 208 LNVFFNDLVS-TRYRRDVYLNWQNILAAFGGLLSLMLGFTLISGFDLVIFLVLHVF 262
           LNVF+ +L +  R  ++ Y    ++   FGG + L LG ++++  + +  LV+++F
Sbjct: 374 LNVFYKELTTEVRKEKEAY-TISDLAGDFGGNMGLFLGCSILTIAEFIDLLVVYLF 428


>SB_45690| Best HMM Match : Homeobox (HMM E-Value=4.6e-31)
          Length = 255

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 41  KTDPLDYYSASVASQGVLVFIDDSYNLPDLDSPVRMVNPSSEVFIALSPERTYSTPGVKG 100
           +T P  Y +A+   Q  +  +D  Y+   + SP      S   F+A  P  T+ST  V G
Sbjct: 5   QTYPAYYGTATEKPQSHVQSLDFPYSQCRMQSPNYYGQTSMPNFMAAMPSNTHSTQ-VNG 63

Query: 101 FPPEQRQCY 109
           + PE  Q +
Sbjct: 64  YSPEPMQSF 72


>SB_16156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 41  KTDPLDYYSASVASQGVLVFIDDSYNLPDLDSPVRMVNPSSEVFIALSPERTYSTPGVKG 100
           +T P  Y +A+   Q  +  +D  Y+   + SP      S   F+A  P  T+ST  V G
Sbjct: 5   QTYPAYYGTATEKPQSHVQSLDFPYSQCRMQSPNYYGQTSMPNFMAAMPSNTHSTQ-VNG 63

Query: 101 FPPEQRQCY 109
           + PE  Q +
Sbjct: 64  YSPEPMQSF 72


>SB_56324| Best HMM Match : ASC (HMM E-Value=1.3e-14)
          Length = 416

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 168 LPECEHFDYPLEVALGKLASNMHLNRLPFFNEVDLVNQSVLNV--FFNDLVSTRYRRDVY 225
           +P   +  YP       +A +M+  R       D V  + L V  +F D++     +   
Sbjct: 325 VPRMSYSQYPANHIADSMAMSMNTTR-------DFVRDNFLEVEIYFEDIMVEIIEQQEA 377

Query: 226 LNWQNILAAFGGLLSLMLGFTLISGFDLVIFLVLHVF 262
            +  +++   GG L + +G ++I+  + + FL+L  F
Sbjct: 378 FSLTSLVGIIGGTLGVFIGASIITVSEFMEFLILIPF 414


>SB_27752| Best HMM Match : ASC (HMM E-Value=3.7e-07)
          Length = 505

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 20  NTPLPRRVASCGYQTALTVLIKTDPLDYYSA-SVASQGVLVFIDDSYNLPDLDSPVRMVN 78
           NTP+    A+   + A + ++ + P +YY   S  + G  + I D    PD+D     ++
Sbjct: 377 NTPVFTARAA-DIRMAFSAMLFSQPEEYYGPFSHRATGFKIAIHDQSETPDIDLESYDLS 435

Query: 79  PSSEVFIALSPERTYST 95
           P     I L  E+ +ST
Sbjct: 436 PGFATNIRLIREKCFST 452


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 270 FVYKNKYVQKINVQERNSHKEAWIMPRPTDAIDRKTRNDPLYS 312
           F+Y  +Y +   VQE   H+E ++ P+P   + R+    P  S
Sbjct: 110 FIYMIEYEEVTEVQEIE-HEEIYVTPKPKTTVKRRPTERPTKS 151


>SB_48042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 78  NPSSEVFIALSPERTYSTPGVKGFPPEQRQCYFKDEVKIANFRQYSFHNCIVYRKLKSIK 137
           N S  V +A+ P   +     +G  PE+++C +  +V  A F +Y+     V   +K  +
Sbjct: 4   NASPFVSMAIKPVHDFQHQ-FRGLVPEEQRCRWTQQVLQAMFNRYNAMTSEVLTSIKKTE 62

Query: 138 DA 139
           D+
Sbjct: 63  DS 64


>SB_48770| Best HMM Match : Peptidase_C1 (HMM E-Value=1.9e-14)
          Length = 183

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 115 KIANFRQYSFHNCIVYRKLKSIKDACNCAPFFLSKGPKSIKNHNTTLVDDLHCLPECEH 173
           +I ++R+    N I  +K  S       A   ++  PKS+K ++  ++ D HC  + +H
Sbjct: 42  RITSYRRVKRFNPIALKKALSYHGP---ATISINANPKSLKYYSDGIMSDKHCSNKTDH 97


>SB_42377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 25  RRVASCGYQTALTVLIKTDPLDYYSA-SVASQGVLVFIDDSYNLPDLD 71
           RR+A+ G   +L + +   P +YY A S  + G ++ + D    PD++
Sbjct: 74  RRIATPGRLESLILRLNAQPEEYYGAYSYENVGFVLAVHDQAEPPDME 121


>SB_5051| Best HMM Match : DUF1193 (HMM E-Value=0.88)
          Length = 634

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 93  YSTPGVKGFPPEQRQCYFKDEVKIANFRQYSFHNCIV---YRKLKS 135
           Y  P  +GFP    +   K E+  A F  + +  C++   YR  KS
Sbjct: 558 YQLPNPRGFPKRDERRILKKEITDAMFGLHCYFGCVIDIAYRITKS 603


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204,113
Number of Sequences: 59808
Number of extensions: 474616
Number of successful extensions: 1170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 15
length of query: 317
length of database: 16,821,457
effective HSP length: 82
effective length of query: 235
effective length of database: 11,917,201
effective search space: 2800542235
effective search space used: 2800542235
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)