GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000674-TA|BGIBMGA000674-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (317 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   5.1  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   6.8  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.0  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 133 LKSIKDACNCAPFFLSKGPKSIKNHNTTLVDDLHC 167
           LKS     +  P    + PKS +NH  T + D  C
Sbjct: 19  LKSSFSISSILPETALEAPKSPENHPETELSDSDC 53


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 212 FNDLVSTRYRRDVYL 226
           F D+ STRY R  ++
Sbjct: 177 FKDMASTRYARQTFI 191


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 93  YSTPGVKGFPPEQRQCYFK 111
           YST G++ F   QR  +FK
Sbjct: 151 YSTYGIQVFGTMQRTSFFK 169


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,520
Number of Sequences: 317
Number of extensions: 3897
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 317
length of database: 114,650
effective HSP length: 57
effective length of query: 260
effective length of database: 96,581
effective search space: 25111060
effective search space used: 25111060
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 43 (21.4 bits)