GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000674-TA|BGIBMGA000674-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    31   0.28 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    30   0.50 
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        29   0.66 
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    28   2.0  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   4.6  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   4.6  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.1  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    26   8.1  

>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 238 LLSLMLGFTLISGFDLVIFLVLHVFYGLIQIIFVYKNKYVQKINVQERNSHKEAWIMPRP 297
           L+ L     L+ G   ++ L+L  F GL +   VY ++YVQ++N   R  +    I P P
Sbjct: 63  LIDLTYKLCLLCG---IVTLLLFYFSGLYRTTIVYPSRYVQQVNKAMRFFNIRLVITPVP 119


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 225 YLNWQNILAAFGGLLSLML-GFTLISGFDLVIFLVLHVFYGLIQIIFVYKNKY-VQKINV 282
           ++ W  +    G    L L G   ++    + F ++ +  G++ + ++YK KY V K N 
Sbjct: 152 HVGWSIMFDNLGRYFLLELRGLREVTFALFITFSIVPIITGILTV-YIYKKKYCVIKFNK 210

Query: 283 QERNSHKEAWI 293
             R+  K++W+
Sbjct: 211 SGRSKKKDSWL 221


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 179 EVALGKLASNMHLNRLPFFNEVDLVNQSVLNVFFNDLVSTRYRRDVYLNWQNILAA 234
           E +  +L  ++HLN LPF N  ++  ++   +F   ++ T Y +   L   N   A
Sbjct: 78  EASFFRLGKHVHLNFLPFENTFEMALRNDFQIFCTSILFTCYIQSFSLLISNFFIA 133


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 197 FNEVDLVNQ-SVLNVFFNDLVSTRYRRDVY 225
           FNE DL N  S +  F ND  S  +R D Y
Sbjct: 419 FNESDLKNMASRIETFINDEASNNHREDFY 448


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 217 STRYRRDVYLNWQNILAAFGGLLSLMLGFTLISGFDLVIFLVLHVFYGLIQIIFVY 272
           ST   + V L  +NI+AA GG+  ++     +  + L    + H+F  + ++  +Y
Sbjct: 256 STGKPKGVVLLHRNIIAALGGINRILSQHINVKDYVLAYLPLAHIFEFIFEMCCLY 311


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 60  FIDDSYNLPDLDSPVRMVNPSSE 82
           FI DSYN+ ++D P  M   SSE
Sbjct: 394 FIGDSYNIANIDPPSSMNVQSSE 416


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 12  FKRPNVLVNTPLPRRVASCGYQTALTVLIKTDPLDYYSASVASQGVLV 59
           FK P  L +    RRV     +  L    K D +DYYSA + + G+ V
Sbjct: 262 FKNPKKLPDDRPVRRV-----KQGLLTSEKVDAIDYYSAKIENYGLRV 304


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 22  PLPRRVASCGYQTALTVLIKTDPLDYYSASVASQGV 57
           P P  V++   ++A   L+K D L YY+A +AS  V
Sbjct: 213 PDPFSVSTYTLKSAFEHLVKKDFLKYYTAYLASSAV 248


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 135 SIKDACNCAPFFLSKGPKSIKNHN--TTLVDDLHCLPECEHFDYPLEVALGKLASNM 189
           S K++ N     + + PK   N N  +T +DDL+ L E EH D   + +     SNM
Sbjct: 36  SNKESTNLDDLNMLEEPKYHDNSNKESTNLDDLNMLEEPEHHDNSKKESTNLDDSNM 92


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,391
Number of Sequences: 5004
Number of extensions: 72009
Number of successful extensions: 235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 10
length of query: 317
length of database: 2,362,478
effective HSP length: 73
effective length of query: 244
effective length of database: 1,997,186
effective search space: 487313384
effective search space used: 487313384
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 54 (25.8 bits)