GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000674-TA|BGIBMGA000674-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0074 - 27509124-27509199,27509613-27512143                       31   0.92 
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926...    31   1.2  
01_04_0020 + 15142402-15143421                                         31   1.6  
10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419...    28   8.6  
10_07_0080 - 12704866-12705224,12705389-12705512,12705905-127060...    28   8.6  

>05_07_0074 - 27509124-27509199,27509613-27512143
          Length = 868

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 21  TPLPRRVASCGYQTALTVLIKTDPLDYYSASVASQGVLV-FIDDSYNLPDLDSPVRMVNP 79
           +PL  +VA     T  ++  KTDPL +    +AS G+ +  +D+S    DL+S + +++ 
Sbjct: 565 SPLDTKVAQHVKGTIRSLRKKTDPLFFEPLDIASYGLYIDKVDESMWRMDLESTMALISM 624

Query: 80  S-SEVFIAL 87
           + S +FIA+
Sbjct: 625 TLSCLFIAV 633


>01_01_1165 -
           9267891-9268145,9268395-9268510,9268991-9269127,
           9269645-9269808,9269892-9269972,9270783-9270962,
           9271489-9271929,9273234-9273344,9274355-9274463,
           9274618-9274643,9274823-9274903,9275013-9275211,
           9275374-9275449,9275553-9275769,9276117-9276155,
           9276684-9276783,9276962-9277084,9277171-9277895
          Length = 1059

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 1/98 (1%)

Query: 17  VLVNTPLPRRVASCGYQTALTVLIKTDPLDYYSASVASQGVLVFIDDSYNLPDLDSPVRM 76
           VL  T LP  V +     A   ++  DP  +Y  S+ S   L  +    +    D P   
Sbjct: 27  VLCGTGLPESVLAAACAAAGKTVLHVDPNPFY-GSLFSSLPLPSLPSFLSPSPSDDPAPS 85

Query: 77  VNPSSEVFIALSPERTYSTPGVKGFPPEQRQCYFKDEV 114
            +PSS   + L     YS     G  PE  + +  D V
Sbjct: 86  PSPSSAAAVDLRRRSPYSEVETSGAVPEPSRRFTADLV 123


>01_04_0020 + 15142402-15143421
          Length = 339

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)

Query: 62  DDSYNLPDLDSPVRMVNPSSEVFIALSPERTYSTPGVKGFPPEQRQ 107
           D+      + SPV    P S   +A  P   Y  P   G+PP Q+Q
Sbjct: 216 DEKATEKSVSSPVTAYPPPSNAVVAHPPVVPYGAPYGGGYPPHQQQ 261


>10_08_0356 +
           17141107-17141165,17141502-17141650,17141748-17141969,
           17142051-17142187,17142319-17142570,17143915-17144063,
           17144476-17144540,17144633-17144701,17145014-17145144,
           17145218-17145505,17145669-17145811,17145898-17145951,
           17146000-17146080,17149048-17149222,17149223-17149647,
           17149929-17150144,17150279-17150309
          Length = 881

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 255 IFLVLHVFYGLIQIIFVYKNKYVQKINVQERNS 287
           ++ +LHVFY  I    +Y + ++  I +Q R+S
Sbjct: 630 VYYILHVFYYFITHFLLYFSDFISLIIIQVRSS 662


>10_07_0080 -
          12704866-12705224,12705389-12705512,12705905-12706041,
          12707971-12708106,12710346-12710759
          Length = 389

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 21 TPLPRRVASCGYQTALTVLIKTDPLDYYSASVASQGVLVF 60
          TPLP R +SC     +   +   P D  S S+A  GV  F
Sbjct: 39 TPLPARPSSCNSNDGVAAAVMPSPED-LSQSLAGSGVEAF 77


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,448,130
Number of Sequences: 37544
Number of extensions: 392903
Number of successful extensions: 899
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 6
length of query: 317
length of database: 14,793,348
effective HSP length: 82
effective length of query: 235
effective length of database: 11,714,740
effective search space: 2752963900
effective search space used: 2752963900
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)