GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000674-TA|BGIBMGA000674-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (317 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ252011-1|CAB85607.1|  505|Homo sapiens amiloride-sensitive sod...    41   0.005

>AJ252011-1|CAB85607.1|  505|Homo sapiens amiloride-sensitive sodium
           channel protein.
          Length = 505

 Score = 41.1 bits (92), Expect = 0.005
 Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 24/182 (13%)

Query: 114 VKIANFRQYSFHNCIVYRKLKSIKDACNCAPFFL-SKGPK-----------------SIK 155
           +K+ NF  YS   C+   K + IK  C C PF L   G +                   K
Sbjct: 302 IKLQNFSSYSTSGCLKECKAQHIKKQCGCVPFLLPGYGIECDLQKYFSCVSPVLDHIEFK 361

Query: 156 NHNTTLVDDLHCLPECEHFDYPLEVALGKLASNMHL----NRLPFFNEVDLVNQSVLNVF 211
           +  T    +  C   CE  +YP  ++     S   L     +L    +    N   + + 
Sbjct: 362 DLCTVGTHNSSCPVSCEEIEYPATISYSSFPSQKALKYLSKKLNQSRKYIRENLVKIEIN 421

Query: 212 FNDLVSTRYRRDVYLNWQNILAAFGGLLSLMLGFTLISGFDLVIFLVLHVFYGLIQIIFV 271
           ++DL     ++   ++   +LA  GG L L  G +LI+  +++ +L  + ++  I I F+
Sbjct: 422 YSDLNYKITQQQKAVSVSELLADLGGQLGLFCGASLITIIEIIEYLFTNFYW--ICIFFL 479

Query: 272 YK 273
            K
Sbjct: 480 LK 481


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,473,150
Number of Sequences: 224733
Number of extensions: 2107260
Number of successful extensions: 5222
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5219
Number of HSP's gapped (non-prelim): 2
length of query: 317
length of database: 73,234,838
effective HSP length: 90
effective length of query: 227
effective length of database: 53,008,868
effective search space: 12033013036
effective search space used: 12033013036
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 65 (30.3 bits)