GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000674-TA|BGIBMGA000674-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (317 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.1  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   8.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   8.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   8.1  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 225 YLNWQNILAAFGGLLSLMLGFTLISGFDLVIFLVLHVFYGLIQIIFVYKNKYV 277
           YL+ +++L+A   + + ++    + G    + LV   F G++++I    NKYV
Sbjct: 111 YLSLRSLLSADVAVATPLISMGALLGKTTYMQLV---FMGIVELIMFTVNKYV 160


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 103 PEQRQCYFKDEVKIANFRQYSFHN 126
           PEQR  YF ++V + +F     HN
Sbjct: 215 PEQRLNYFTEDVGLNHFYFMLNHN 238



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 281 NVQERNSHKEAWIMPR--PTDAI 301
           N  ERNSH+  +++P   P+D +
Sbjct: 553 NTIERNSHESVFVVPDEVPSDVL 575


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 233 AAFGGLLSLMLGFTLISGFD 252
           A FG +    +G +LI GFD
Sbjct: 105 ALFGKIKPTAIGLSLIKGFD 124


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 257 LVLHVFYGLIQIIFVYKNKYVQKINVQE 284
           + +H  + LI IIF+Y N+ + ++   E
Sbjct: 8   MFIHSIF-LILIIFIYSNETIAQVTDDE 34


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 257 LVLHVFYGLIQIIFVYKNKYVQKINVQE 284
           + +H  + LI IIF+Y N+ + ++   E
Sbjct: 8   MFIHSIF-LILIIFIYSNETIAQVTDDE 34


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 281 NVQERNSHKEAWIMP 295
           N  ERNSH+  +++P
Sbjct: 179 NTIERNSHESXFVVP 193


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,523
Number of Sequences: 429
Number of extensions: 4940
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 317
length of database: 140,377
effective HSP length: 58
effective length of query: 259
effective length of database: 115,495
effective search space: 29913205
effective search space used: 29913205
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 44 (21.8 bits)