GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000674-TA|BGIBMGA000674-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (317 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80810.1 68414.m09481 expressed protein similar to androgen-i...    29   3.1  
At3g03520.1 68416.m00351 phosphoesterase family protein low simi...    28   7.1  
At2g19410.1 68415.m02264 protein kinase family protein contains ...    28   7.1  
At1g66235.1 68414.m07518 expressed protein ; expression supporte...    28   9.4  

>At1g80810.1 68414.m09481 expressed protein similar to
          androgen-induced prostate proliferative shutoff
          associated protein (GI:4559410) [Homo sapiens]; similar
          to bimD (GI:168025) [Emericella nidulans]
          Length = 826

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 44 PLDYYSASVASQGVLVFIDDSYNLPDLDSPVRMVNPSSEVFIALSPERTYS 94
          PL   SA + S+  LV +D   + PD D  V +V+  +E+    +PE  YS
Sbjct: 50 PLSMQSALIPSRNALVSVD-LLSHPDSDVRVSVVSCLTEIVRITAPETPYS 99


>At3g03520.1 68416.m00351 phosphoesterase family protein low
           similarity to SP|P95246 Phospholipase C 2 precursor (EC
           3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
           profile PF04185: Phosphoesterase family
          Length = 523

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 98  VKGFPPEQRQCYFKDEVKIANFRQY--SFHNCIVYRKLKSIKDACNCAPFFLS 148
           V+GFP  QR  +   E     F  Y  SF NC+ YR ++ +K   N   + LS
Sbjct: 182 VRGFP--QRTVFESLEESGFTFGIYYQSFPNCLFYRNMRKLKYVDNFHQYHLS 232


>At2g19410.1 68415.m02264 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 801

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 2   SEPAFVVDPNFKRPNVLVNTPLPRRVASCGYQTALTVLIKTDPLDYYSASVASQGVLVFI 61
           S+P  +V  + K  N+L+N     ++A  G    +T  +  D +  Y  SV + G L +I
Sbjct: 555 SKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTD-VAPDNVTMYRNSVLA-GTLHYI 612

Query: 62  DDSYN 66
           D  Y+
Sbjct: 613 DPEYH 617


>At1g66235.1 68414.m07518 expressed protein ; expression supported
           by MPSS
          Length = 265

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 105 QRQCYFKDEVKIANFRQYSFHNCIVYRKLKSIKDACNCAPFFLSKGPKSIK 155
           QRQ Y + + K    R+    N ++YR L SI+D  N   +  S+  K ++
Sbjct: 201 QRQQYLEMQSKSLALREQKEENKVLYRNLNSIEDP-NLRAYLQSEQAKILR 250


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,974,114
Number of Sequences: 28952
Number of extensions: 344990
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 4
length of query: 317
length of database: 12,070,560
effective HSP length: 81
effective length of query: 236
effective length of database: 9,725,448
effective search space: 2295205728
effective search space used: 2295205728
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 59 (27.9 bits)